Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 102212 | 0.67 | 0.622462 |
Target: 5'- cGCGCCGGgagucgaccgGGCGCGGC-UCGGgGCg- -3' miRNA: 3'- -UGCGGUCg---------CCGUGCCGuAGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 142130 | 0.67 | 0.632425 |
Target: 5'- cGCGCUGcCGGaCGCGGCAcaggUGGUGCa- -3' miRNA: 3'- -UGCGGUcGCC-GUGCCGUa---GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 150839 | 0.67 | 0.632425 |
Target: 5'- gGCGCCAgGgGGCGCcggucgGGUcgCGGcggGCUGg -3' miRNA: 3'- -UGCGGU-CgCCGUG------CCGuaGCCa--CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154407 | 0.67 | 0.632425 |
Target: 5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3' miRNA: 3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 69 | 0.67 | 0.632425 |
Target: 5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3' miRNA: 3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 46474 | 0.67 | 0.63641 |
Target: 5'- cUGCCAGCGGgGaCGGCGccaacugcggaaacCGGUGCa- -3' miRNA: 3'- uGCGGUCGCCgU-GCCGUa-------------GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 129056 | 0.66 | 0.642387 |
Target: 5'- gGCGCUGGUGGaguuaaauaGCGGCGUUgucucggaGGUGCUu -3' miRNA: 3'- -UGCGGUCGCCg--------UGCCGUAG--------CCACGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 132689 | 0.66 | 0.642387 |
Target: 5'- cACGCCGacGCGGCGCaGGCG-CGGgggucGCg- -3' miRNA: 3'- -UGCGGU--CGCCGUG-CCGUaGCCa----CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 109383 | 0.66 | 0.662282 |
Target: 5'- -aGCgGGCuGCGCGGCcgacUCGGUGUUc -3' miRNA: 3'- ugCGgUCGcCGUGCCGu---AGCCACGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 111810 | 0.66 | 0.662282 |
Target: 5'- uGCGCCGGUcGCG-GGCGUCcaGGgGCUGg -3' miRNA: 3'- -UGCGGUCGcCGUgCCGUAG--CCaCGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 15476 | 0.66 | 0.672199 |
Target: 5'- gACGUgGGCGGgGgGGUcgUGGggGCUGg -3' miRNA: 3'- -UGCGgUCGCCgUgCCGuaGCCa-CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 150195 | 0.66 | 0.672199 |
Target: 5'- gGCGUggggGGCGGCACcgggGGUGUUGGUGCc- -3' miRNA: 3'- -UGCGg---UCGCCGUG----CCGUAGCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 70314 | 0.66 | 0.682084 |
Target: 5'- cGCGgCGGuCGGCcCGGCGgaggcgCGGgcgUGCUGg -3' miRNA: 3'- -UGCgGUC-GCCGuGCCGUa-----GCC---ACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 90722 | 0.66 | 0.682084 |
Target: 5'- uCGCgCGG-GGCACGGCAcugcaGGUGCc- -3' miRNA: 3'- uGCG-GUCgCCGUGCCGUag---CCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 3306 | 0.66 | 0.682084 |
Target: 5'- cCGCCgacggcaacggGGCGGCgGCGGCggCGG-GCUu -3' miRNA: 3'- uGCGG-----------UCGCCG-UGCCGuaGCCaCGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 36585 | 0.66 | 0.690948 |
Target: 5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3' miRNA: 3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 36522 | 0.66 | 0.690948 |
Target: 5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3' miRNA: 3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 2705 | 0.66 | 0.691931 |
Target: 5'- -gGCC-GCGGCgACGGUGUCGGccaGCa- -3' miRNA: 3'- ugCGGuCGCCG-UGCCGUAGCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 35532 | 0.66 | 0.691931 |
Target: 5'- cCGCC-GCGGC-CGGCG-CGGgGCg- -3' miRNA: 3'- uGCGGuCGCCGuGCCGUaGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 44881 | 0.66 | 0.691931 |
Target: 5'- cGCGCguGUuccGGgAUGGCGUCccugcucgGGUGCUGu -3' miRNA: 3'- -UGCGguCG---CCgUGCCGUAG--------CCACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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