Results 41 - 60 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 152644 | 0.68 | 0.553294 |
Target: 5'- gGCGCCccgcCGGCGCGGCccugagUGGUGCc- -3' miRNA: 3'- -UGCGGuc--GCCGUGCCGua----GCCACGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 54646 | 0.68 | 0.54357 |
Target: 5'- cGCGCCccccgagcAGCGGC-CGGCAgccgCGGcGCg- -3' miRNA: 3'- -UGCGG--------UCGCCGuGCCGUa---GCCaCGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 12023 | 0.68 | 0.54357 |
Target: 5'- aACGCCAcgGCGGgGCGGCGggGGcaUGCg- -3' miRNA: 3'- -UGCGGU--CGCCgUGCCGUagCC--ACGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 28076 | 0.68 | 0.533904 |
Target: 5'- cGCGCCGGCcGCguccucgcuccuGCGGCGcUGGcUGCUGg -3' miRNA: 3'- -UGCGGUCGcCG------------UGCCGUaGCC-ACGAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 54389 | 0.68 | 0.533904 |
Target: 5'- -gGCC-GCGGCGCGGUcggCGGgaGCUGc -3' miRNA: 3'- ugCGGuCGCCGUGCCGua-GCCa-CGAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 24450 | 0.68 | 0.524298 |
Target: 5'- cCGCCGGCuacGGCGCcGCGggGGUGCUc -3' miRNA: 3'- uGCGGUCG---CCGUGcCGUagCCACGAc -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 98570 | 0.68 | 0.524298 |
Target: 5'- gGCGCUGGUGGCcgcggUGGCGUCGGcgGCc- -3' miRNA: 3'- -UGCGGUCGCCGu----GCCGUAGCCa-CGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 2848 | 0.68 | 0.524298 |
Target: 5'- cGCGCaCGGCGGcCACGGCGgccUCGcUGCc- -3' miRNA: 3'- -UGCG-GUCGCC-GUGCCGU---AGCcACGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 104518 | 0.68 | 0.522385 |
Target: 5'- cGCGgCGGCGGCGCGGUugacgucgucgCGGUGg-- -3' miRNA: 3'- -UGCgGUCGCCGUGCCGua---------GCCACgac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 150360 | 0.69 | 0.495901 |
Target: 5'- cGCGuCCAcCGGCACGGCGggCGGcGCg- -3' miRNA: 3'- -UGC-GGUcGCCGUGCCGUa-GCCaCGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 72317 | 0.69 | 0.495901 |
Target: 5'- uACGCCcuGGCGGCcCGGgG--GGUGCUGc -3' miRNA: 3'- -UGCGG--UCGCCGuGCCgUagCCACGAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 71562 | 0.69 | 0.495901 |
Target: 5'- gGCGCCAGCGaGCACacGCA-CGGgcgGCUc -3' miRNA: 3'- -UGCGGUCGC-CGUGc-CGUaGCCa--CGAc -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 51840 | 0.69 | 0.486589 |
Target: 5'- cGCGCCugcacacggAGgGGCGCGGC-UCGGaGCUc -3' miRNA: 3'- -UGCGG---------UCgCCGUGCCGuAGCCaCGAc -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 140186 | 0.69 | 0.486589 |
Target: 5'- uACGCgGGCcGCcuGCGGC--CGGUGCUGg -3' miRNA: 3'- -UGCGgUCGcCG--UGCCGuaGCCACGAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 22290 | 0.69 | 0.486589 |
Target: 5'- cGCGCgGGCGGaGCGGCggCGGcGCg- -3' miRNA: 3'- -UGCGgUCGCCgUGCCGuaGCCaCGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 12856 | 0.69 | 0.483812 |
Target: 5'- gGCGUUGGUGGUgucggacagcuccgGCGGCAgcagGGUGCUGg -3' miRNA: 3'- -UGCGGUCGCCG--------------UGCCGUag--CCACGAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 4414 | 0.69 | 0.477361 |
Target: 5'- gGCGCCGGgGGuCGCGGCGaCaG-GCUGg -3' miRNA: 3'- -UGCGGUCgCC-GUGCCGUaGcCaCGAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 36141 | 0.69 | 0.468221 |
Target: 5'- cCGCCGGUggGGCGCGGCggcgGUCGG-GgUGg -3' miRNA: 3'- uGCGGUCG--CCGUGCCG----UAGCCaCgAC- -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 2664 | 0.69 | 0.468221 |
Target: 5'- cGCGCCucccGCGGCGCGGaggCGG-GCg- -3' miRNA: 3'- -UGCGGu---CGCCGUGCCguaGCCaCGac -5' |
|||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 34582 | 0.7 | 0.441355 |
Target: 5'- -gGCuCAcGCGGCGCGGCGucUCGGUGg-- -3' miRNA: 3'- ugCG-GU-CGCCGUGCCGU--AGCCACgac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home