miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 69 0.67 0.632425
Target:  5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3'
miRNA:   3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 1424 0.7 0.415386
Target:  5'- gGCcCCAGCGcGCGCaGGCG-CGGUGCg- -3'
miRNA:   3'- -UGcGGUCGC-CGUG-CCGUaGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 2418 0.75 0.233139
Target:  5'- gGCGCCGGCguguGGCugGGCccCGGcgGCUGg -3'
miRNA:   3'- -UGCGGUCG----CCGugCCGuaGCCa-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 2499 0.72 0.338931
Target:  5'- aGCGCCGcggggcgcggcggccGCGGCgGCGGCGUCGGcgggGCg- -3'
miRNA:   3'- -UGCGGU---------------CGCCG-UGCCGUAGCCa---CGac -5'
5447 5' -61.1 NC_001798.1 + 2664 0.69 0.468221
Target:  5'- cGCGCCucccGCGGCGCGGaggCGG-GCg- -3'
miRNA:   3'- -UGCGGu---CGCCGUGCCguaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 2705 0.66 0.691931
Target:  5'- -gGCC-GCGGCgACGGUGUCGGccaGCa- -3'
miRNA:   3'- ugCGGuCGCCG-UGCCGUAGCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 2848 0.68 0.524298
Target:  5'- cGCGCaCGGCGGcCACGGCGgccUCGcUGCc- -3'
miRNA:   3'- -UGCG-GUCGCC-GUGCCGU---AGCcACGac -5'
5447 5' -61.1 NC_001798.1 + 3009 0.68 0.572889
Target:  5'- gGCGCgGG-GGCGCGGCGggcCGG-GCUc -3'
miRNA:   3'- -UGCGgUCgCCGUGCCGUa--GCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 3306 0.66 0.682084
Target:  5'- cCGCCgacggcaacggGGCGGCgGCGGCggCGG-GCUu -3'
miRNA:   3'- uGCGG-----------UCGCCG-UGCCGuaGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 3425 0.7 0.432596
Target:  5'- cGCGCCAGCaggggcgcguaGGCGCGGCG-CaG-GCUGg -3'
miRNA:   3'- -UGCGGUCG-----------CCGUGCCGUaGcCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 4195 0.68 0.553294
Target:  5'- cCGCCcGCGGCGUGGUcugCGGcGCUGg -3'
miRNA:   3'- uGCGGuCGCCGUGCCGua-GCCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 4373 0.74 0.250178
Target:  5'- cGCGCCGGCGGCGguggUGGUggUGGUGgUGg -3'
miRNA:   3'- -UGCGGUCGCCGU----GCCGuaGCCACgAC- -5'
5447 5' -61.1 NC_001798.1 + 4414 0.69 0.477361
Target:  5'- gGCGCCGGgGGuCGCGGCGaCaG-GCUGg -3'
miRNA:   3'- -UGCGGUCgCC-GUGCCGUaGcCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 4747 0.73 0.293919
Target:  5'- gACGCCGGggccgccucguCGGCAuCGGCAUCGGcgGCg- -3'
miRNA:   3'- -UGCGGUC-----------GCCGU-GCCGUAGCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 12023 0.68 0.54357
Target:  5'- aACGCCAcgGCGGgGCGGCGggGGcaUGCg- -3'
miRNA:   3'- -UGCGGU--CGCCgUGCCGUagCC--ACGac -5'
5447 5' -61.1 NC_001798.1 + 12856 0.69 0.483812
Target:  5'- gGCGUUGGUGGUgucggacagcuccgGCGGCAgcagGGUGCUGg -3'
miRNA:   3'- -UGCGGUCGCCG--------------UGCCGUag--CCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 15476 0.66 0.672199
Target:  5'- gACGUgGGCGGgGgGGUcgUGGggGCUGg -3'
miRNA:   3'- -UGCGgUCGCCgUgCCGuaGCCa-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 22290 0.69 0.486589
Target:  5'- cGCGCgGGCGGaGCGGCggCGGcGCg- -3'
miRNA:   3'- -UGCGgUCGCCgUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 22874 0.7 0.441355
Target:  5'- cCGCCGcGCGGCcCGGguUCGGgugGCa- -3'
miRNA:   3'- uGCGGU-CGCCGuGCCguAGCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 24450 0.68 0.524298
Target:  5'- cCGCCGGCuacGGCGCcGCGggGGUGCUc -3'
miRNA:   3'- uGCGGUCG---CCGUGcCGUagCCACGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.