miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 24551 0.73 0.307465
Target:  5'- gGCGCCGGCGGUggugGCGGCGgcCGGcGCg- -3'
miRNA:   3'- -UGCGGUCGCCG----UGCCGUa-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 25966 0.71 0.381453
Target:  5'- -gGCCGGCGGCGCGGgAccugCGccgcaccGUGCUGg -3'
miRNA:   3'- ugCGGUCGCCGUGCCgUa---GC-------CACGAC- -5'
5447 5' -61.1 NC_001798.1 + 26494 0.72 0.321484
Target:  5'- cCGCgGGCcGCGCGGgGaCGGUGCUGg -3'
miRNA:   3'- uGCGgUCGcCGUGCCgUaGCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 28076 0.68 0.533904
Target:  5'- cGCGCCGGCcGCguccucgcuccuGCGGCGcUGGcUGCUGg -3'
miRNA:   3'- -UGCGGUCGcCG------------UGCCGUaGCC-ACGAC- -5'
5447 5' -61.1 NC_001798.1 + 28670 0.67 0.621466
Target:  5'- gGCGCCgcguggcGGCGGCcgagGCGGuCAUCGGaccgUGcCUGg -3'
miRNA:   3'- -UGCGG-------UCGCCG----UGCC-GUAGCC----AC-GAC- -5'
5447 5' -61.1 NC_001798.1 + 31139 0.71 0.374256
Target:  5'- aGCGCCc-CGGCGCGGgGgcggCGGUGCg- -3'
miRNA:   3'- -UGCGGucGCCGUGCCgUa---GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 34582 0.7 0.441355
Target:  5'- -gGCuCAcGCGGCGCGGCGucUCGGUGg-- -3'
miRNA:   3'- ugCG-GU-CGCCGUGCCGU--AGCCACgac -5'
5447 5' -61.1 NC_001798.1 + 34790 0.67 0.612506
Target:  5'- aACGCCGcCGGCGCGGCc-CGGgGCc- -3'
miRNA:   3'- -UGCGGUcGCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 34961 0.68 0.553294
Target:  5'- gGCGCCGGagGGgGCGGCcgCcgaGGUGCg- -3'
miRNA:   3'- -UGCGGUCg-CCgUGCCGuaG---CCACGac -5'
5447 5' -61.1 NC_001798.1 + 35532 0.66 0.691931
Target:  5'- cCGCC-GCGGC-CGGCG-CGGgGCg- -3'
miRNA:   3'- uGCGGuCGCCGuGCCGUaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 36023 0.65 0.698796
Target:  5'- cGCGCCuuggcuguuuggggGGUGGCgGCGGUgGUCGGcgUGCUGc -3'
miRNA:   3'- -UGCGG--------------UCGCCG-UGCCG-UAGCC--ACGAC- -5'
5447 5' -61.1 NC_001798.1 + 36141 0.69 0.468221
Target:  5'- cCGCCGGUggGGCGCGGCggcgGUCGG-GgUGg -3'
miRNA:   3'- uGCGGUCG--CCGUGCCG----UAGCCaCgAC- -5'
5447 5' -61.1 NC_001798.1 + 36522 0.66 0.690948
Target:  5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3'
miRNA:   3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 36585 0.66 0.690948
Target:  5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3'
miRNA:   3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 37196 0.67 0.622462
Target:  5'- gGCGCCGcGCcgaacgacgGGCGCGGCGcCGGaGCUu -3'
miRNA:   3'- -UGCGGU-CG---------CCGUGCCGUaGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 44881 0.66 0.691931
Target:  5'- cGCGCguGUuccGGgAUGGCGUCccugcucgGGUGCUGu -3'
miRNA:   3'- -UGCGguCG---CCgUGCCGUAG--------CCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 46474 0.67 0.63641
Target:  5'- cUGCCAGCGGgGaCGGCGccaacugcggaaacCGGUGCa- -3'
miRNA:   3'- uGCGGUCGCCgU-GCCGUa-------------GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 48166 0.66 0.691931
Target:  5'- gGCGCCuGGCGGCcacgcacgcccgGCuGGCggCGGUacaGCUGu -3'
miRNA:   3'- -UGCGG-UCGCCG------------UG-CCGuaGCCA---CGAC- -5'
5447 5' -61.1 NC_001798.1 + 51840 0.69 0.486589
Target:  5'- cGCGCCugcacacggAGgGGCGCGGC-UCGGaGCUc -3'
miRNA:   3'- -UGCGG---------UCgCCGUGCCGuAGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 52499 0.68 0.572889
Target:  5'- cGCGCCGGCGcagggacgacGCgGCGGCcgCGcgcgccGUGCUGg -3'
miRNA:   3'- -UGCGGUCGC----------CG-UGCCGuaGC------CACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.