Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 112592 | 0.68 | 0.553294 |
Target: 5'- --cCCAcuGUGGauCGCGGCGUCGGUGCUu -3' miRNA: 3'- ugcGGU--CGCC--GUGCCGUAGCCACGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 113976 | 0.68 | 0.563069 |
Target: 5'- cCGCCGGCGGUGaGGCGUU-GUGCg- -3' miRNA: 3'- uGCGGUCGCCGUgCCGUAGcCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 114865 | 0.72 | 0.328671 |
Target: 5'- cGCGCgGGCGGC-CGGUcgacggGGUGCUGg -3' miRNA: 3'- -UGCGgUCGCCGuGCCGuag---CCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 118615 | 0.72 | 0.314416 |
Target: 5'- gAUGCC-GCGGCGCuGCAgCGGUGCg- -3' miRNA: 3'- -UGCGGuCGCCGUGcCGUaGCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 122046 | 0.68 | 0.553294 |
Target: 5'- cCGUCAGCGGgggagccCugGGCGcgucggacgcggaggCGGUGCUGg -3' miRNA: 3'- uGCGGUCGCC-------GugCCGUa--------------GCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 129056 | 0.66 | 0.642387 |
Target: 5'- gGCGCUGGUGGaguuaaauaGCGGCGUUgucucggaGGUGCUu -3' miRNA: 3'- -UGCGGUCGCCg--------UGCCGUAG--------CCACGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 131354 | 0.67 | 0.602564 |
Target: 5'- gACGUCGGCgcccGGCGCGGCcUCGGgggaucccCUGg -3' miRNA: 3'- -UGCGGUCG----CCGUGCCGuAGCCac------GAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 132145 | 0.68 | 0.563069 |
Target: 5'- cCGCCGGgGGC-CGGCGggCGGgGCg- -3' miRNA: 3'- uGCGGUCgCCGuGCCGUa-GCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 132689 | 0.66 | 0.642387 |
Target: 5'- cACGCCGacGCGGCGCaGGCG-CGGgggucGCg- -3' miRNA: 3'- -UGCGGU--CGCCGUG-CCGUaGCCa----CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 134674 | 0.68 | 0.553294 |
Target: 5'- cCG-CAGCGGguCACGGCGcgGGUGCUGc -3' miRNA: 3'- uGCgGUCGCC--GUGCCGUagCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 140186 | 0.69 | 0.486589 |
Target: 5'- uACGCgGGCcGCcuGCGGC--CGGUGCUGg -3' miRNA: 3'- -UGCGgUCGcCG--UGCCGuaGCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 142130 | 0.67 | 0.632425 |
Target: 5'- cGCGCUGcCGGaCGCGGCAcaggUGGUGCa- -3' miRNA: 3'- -UGCGGUcGCC-GUGCCGUa---GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 145802 | 0.67 | 0.586703 |
Target: 5'- cGCGCgGGCGGCagaaacgcgggcgcgGCGGCGgUCGG-GgUGg -3' miRNA: 3'- -UGCGgUCGCCG---------------UGCCGU-AGCCaCgAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 150195 | 0.66 | 0.672199 |
Target: 5'- gGCGUggggGGCGGCACcgggGGUGUUGGUGCc- -3' miRNA: 3'- -UGCGg---UCGCCGUG----CCGUAGCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 150360 | 0.69 | 0.495901 |
Target: 5'- cGCGuCCAcCGGCACGGCGggCGGcGCg- -3' miRNA: 3'- -UGC-GGUcGCCGUGCCGUa-GCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 150839 | 0.67 | 0.632425 |
Target: 5'- gGCGCCAgGgGGCGCcggucgGGUcgCGGcggGCUGg -3' miRNA: 3'- -UGCGGU-CgCCGUG------CCGuaGCCa--CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 152644 | 0.68 | 0.553294 |
Target: 5'- gGCGCCccgcCGGCGCGGCccugagUGGUGCc- -3' miRNA: 3'- -UGCGGuc--GCCGUGCCGua----GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 153818 | 0.7 | 0.415386 |
Target: 5'- gGCGgCGGCaGGCGCGGCGUgCGGgGCc- -3' miRNA: 3'- -UGCgGUCG-CCGUGCCGUA-GCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154046 | 0.72 | 0.333772 |
Target: 5'- cGCGCCGgggcGCGGCACGGCuggagcgccggggcgCGGcacgGCUGg -3' miRNA: 3'- -UGCGGU----CGCCGUGCCGua-------------GCCa---CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154094 | 0.67 | 0.582749 |
Target: 5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3' miRNA: 3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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