miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 154407 0.67 0.632425
Target:  5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3'
miRNA:   3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 154154 0.67 0.602564
Target:  5'- -gGCgGGCGGCugGGC-UCGGcGUa- -3'
miRNA:   3'- ugCGgUCGCCGugCCGuAGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 154094 0.67 0.582749
Target:  5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3'
miRNA:   3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 154046 0.72 0.333772
Target:  5'- cGCGCCGgggcGCGGCACGGCuggagcgccggggcgCGGcacgGCUGg -3'
miRNA:   3'- -UGCGGU----CGCCGUGCCGua-------------GCCa---CGAC- -5'
5447 5' -61.1 NC_001798.1 + 153818 0.7 0.415386
Target:  5'- gGCGgCGGCaGGCGCGGCGUgCGGgGCc- -3'
miRNA:   3'- -UGCgGUCG-CCGUGCCGUA-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 152644 0.68 0.553294
Target:  5'- gGCGCCccgcCGGCGCGGCccugagUGGUGCc- -3'
miRNA:   3'- -UGCGGuc--GCCGUGCCGua----GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 150839 0.67 0.632425
Target:  5'- gGCGCCAgGgGGCGCcggucgGGUcgCGGcggGCUGg -3'
miRNA:   3'- -UGCGGU-CgCCGUG------CCGuaGCCa--CGAC- -5'
5447 5' -61.1 NC_001798.1 + 150360 0.69 0.495901
Target:  5'- cGCGuCCAcCGGCACGGCGggCGGcGCg- -3'
miRNA:   3'- -UGC-GGUcGCCGUGCCGUa-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 150195 0.66 0.672199
Target:  5'- gGCGUggggGGCGGCACcgggGGUGUUGGUGCc- -3'
miRNA:   3'- -UGCGg---UCGCCGUG----CCGUAGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 145802 0.67 0.586703
Target:  5'- cGCGCgGGCGGCagaaacgcgggcgcgGCGGCGgUCGG-GgUGg -3'
miRNA:   3'- -UGCGgUCGCCG---------------UGCCGU-AGCCaCgAC- -5'
5447 5' -61.1 NC_001798.1 + 142130 0.67 0.632425
Target:  5'- cGCGCUGcCGGaCGCGGCAcaggUGGUGCa- -3'
miRNA:   3'- -UGCGGUcGCC-GUGCCGUa---GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 140186 0.69 0.486589
Target:  5'- uACGCgGGCcGCcuGCGGC--CGGUGCUGg -3'
miRNA:   3'- -UGCGgUCGcCG--UGCCGuaGCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 134674 0.68 0.553294
Target:  5'- cCG-CAGCGGguCACGGCGcgGGUGCUGc -3'
miRNA:   3'- uGCgGUCGCC--GUGCCGUagCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 132689 0.66 0.642387
Target:  5'- cACGCCGacGCGGCGCaGGCG-CGGgggucGCg- -3'
miRNA:   3'- -UGCGGU--CGCCGUG-CCGUaGCCa----CGac -5'
5447 5' -61.1 NC_001798.1 + 132145 0.68 0.563069
Target:  5'- cCGCCGGgGGC-CGGCGggCGGgGCg- -3'
miRNA:   3'- uGCGGUCgCCGuGCCGUa-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 131354 0.67 0.602564
Target:  5'- gACGUCGGCgcccGGCGCGGCcUCGGgggaucccCUGg -3'
miRNA:   3'- -UGCGGUCG----CCGUGCCGuAGCCac------GAC- -5'
5447 5' -61.1 NC_001798.1 + 129056 0.66 0.642387
Target:  5'- gGCGCUGGUGGaguuaaauaGCGGCGUUgucucggaGGUGCUu -3'
miRNA:   3'- -UGCGGUCGCCg--------UGCCGUAG--------CCACGAc -5'
5447 5' -61.1 NC_001798.1 + 122046 0.68 0.553294
Target:  5'- cCGUCAGCGGgggagccCugGGCGcgucggacgcggaggCGGUGCUGg -3'
miRNA:   3'- uGCGGUCGCC-------GugCCGUa--------------GCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 118615 0.72 0.314416
Target:  5'- gAUGCC-GCGGCGCuGCAgCGGUGCg- -3'
miRNA:   3'- -UGCGGuCGCCGUGcCGUaGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 114865 0.72 0.328671
Target:  5'- cGCGCgGGCGGC-CGGUcgacggGGUGCUGg -3'
miRNA:   3'- -UGCGgUCGCCGuGCCGuag---CCACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.