Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 154407 | 0.67 | 0.632425 |
Target: 5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3' miRNA: 3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 69 | 0.67 | 0.632425 |
Target: 5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3' miRNA: 3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 3009 | 0.68 | 0.572889 |
Target: 5'- gGCGCgGG-GGCGCGGCGggcCGG-GCUc -3' miRNA: 3'- -UGCGgUCgCCGUGCCGUa--GCCaCGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 132145 | 0.68 | 0.563069 |
Target: 5'- cCGCCGGgGGC-CGGCGggCGGgGCg- -3' miRNA: 3'- uGCGGUCgCCGuGCCGUa-GCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 113976 | 0.68 | 0.563069 |
Target: 5'- cCGCCGGCGGUGaGGCGUU-GUGCg- -3' miRNA: 3'- uGCGGUCGCCGUgCCGUAGcCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 53101 | 0.68 | 0.557198 |
Target: 5'- aACGCCGggcgcGCGGCGCgagcucccugcggcuGGCG-CGGUGcCUGa -3' miRNA: 3'- -UGCGGU-----CGCCGUG---------------CCGUaGCCAC-GAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 152644 | 0.68 | 0.553294 |
Target: 5'- gGCGCCccgcCGGCGCGGCccugagUGGUGCc- -3' miRNA: 3'- -UGCGGuc--GCCGUGCCGua----GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 112592 | 0.68 | 0.553294 |
Target: 5'- --cCCAcuGUGGauCGCGGCGUCGGUGCUu -3' miRNA: 3'- ugcGGU--CGCC--GUGCCGUAGCCACGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 4195 | 0.68 | 0.553294 |
Target: 5'- cCGCCcGCGGCGUGGUcugCGGcGCUGg -3' miRNA: 3'- uGCGGuCGCCGUGCCGua-GCCaCGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 122046 | 0.68 | 0.553294 |
Target: 5'- cCGUCAGCGGgggagccCugGGCGcgucggacgcggaggCGGUGCUGg -3' miRNA: 3'- uGCGGUCGCC-------GugCCGUa--------------GCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 52499 | 0.68 | 0.572889 |
Target: 5'- cGCGCCGGCGcagggacgacGCgGCGGCcgCGcgcgccGUGCUGg -3' miRNA: 3'- -UGCGGUCGC----------CG-UGCCGuaGC------CACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 97760 | 0.67 | 0.582749 |
Target: 5'- -gGUCAGCGucCACGGCga-GGUGCUGc -3' miRNA: 3'- ugCGGUCGCc-GUGCCGuagCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 102212 | 0.67 | 0.622462 |
Target: 5'- cGCGCCGGgagucgaccgGGCGCGGC-UCGGgGCg- -3' miRNA: 3'- -UGCGGUCg---------CCGUGCCGuAGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 37196 | 0.67 | 0.622462 |
Target: 5'- gGCGCCGcGCcgaacgacgGGCGCGGCGcCGGaGCUu -3' miRNA: 3'- -UGCGGU-CG---------CCGUGCCGUaGCCaCGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 28670 | 0.67 | 0.621466 |
Target: 5'- gGCGCCgcguggcGGCGGCcgagGCGGuCAUCGGaccgUGcCUGg -3' miRNA: 3'- -UGCGG-------UCGCCG----UGCC-GUAGCC----AC-GAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 34790 | 0.67 | 0.612506 |
Target: 5'- aACGCCGcCGGCGCGGCc-CGGgGCc- -3' miRNA: 3'- -UGCGGUcGCCGUGCCGuaGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 131354 | 0.67 | 0.602564 |
Target: 5'- gACGUCGGCgcccGGCGCGGCcUCGGgggaucccCUGg -3' miRNA: 3'- -UGCGGUCG----CCGUGCCGuAGCCac------GAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154154 | 0.67 | 0.602564 |
Target: 5'- -gGCgGGCGGCugGGC-UCGGcGUa- -3' miRNA: 3'- ugCGgUCGCCGugCCGuAGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 145802 | 0.67 | 0.586703 |
Target: 5'- cGCGCgGGCGGCagaaacgcgggcgcgGCGGCGgUCGG-GgUGg -3' miRNA: 3'- -UGCGgUCGCCG---------------UGCCGU-AGCCaCgAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154094 | 0.67 | 0.582749 |
Target: 5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3' miRNA: 3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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