Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 36585 | 0.66 | 0.690948 |
Target: 5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3' miRNA: 3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 2705 | 0.66 | 0.691931 |
Target: 5'- -gGCC-GCGGCgACGGUGUCGGccaGCa- -3' miRNA: 3'- ugCGGuCGCCG-UGCCGUAGCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 35532 | 0.66 | 0.691931 |
Target: 5'- cCGCC-GCGGC-CGGCG-CGGgGCg- -3' miRNA: 3'- uGCGGuCGCCGuGCCGUaGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 44881 | 0.66 | 0.691931 |
Target: 5'- cGCGCguGUuccGGgAUGGCGUCccugcucgGGUGCUGu -3' miRNA: 3'- -UGCGguCG---CCgUGCCGUAG--------CCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 48166 | 0.66 | 0.691931 |
Target: 5'- gGCGCCuGGCGGCcacgcacgcccgGCuGGCggCGGUacaGCUGu -3' miRNA: 3'- -UGCGG-UCGCCG------------UG-CCGuaGCCA---CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 132689 | 0.66 | 0.642387 |
Target: 5'- cACGCCGacGCGGCGCaGGCG-CGGgggucGCg- -3' miRNA: 3'- -UGCGGU--CGCCGUG-CCGUaGCCa----CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 129056 | 0.66 | 0.642387 |
Target: 5'- gGCGCUGGUGGaguuaaauaGCGGCGUUgucucggaGGUGCUu -3' miRNA: 3'- -UGCGGUCGCCg--------UGCCGUAG--------CCACGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154094 | 0.67 | 0.582749 |
Target: 5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3' miRNA: 3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 145802 | 0.67 | 0.586703 |
Target: 5'- cGCGCgGGCGGCagaaacgcgggcgcgGCGGCGgUCGG-GgUGg -3' miRNA: 3'- -UGCGgUCGCCG---------------UGCCGU-AGCCaCgAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154154 | 0.67 | 0.602564 |
Target: 5'- -gGCgGGCGGCugGGC-UCGGcGUa- -3' miRNA: 3'- ugCGgUCGCCGugCCGuAGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 131354 | 0.67 | 0.602564 |
Target: 5'- gACGUCGGCgcccGGCGCGGCcUCGGgggaucccCUGg -3' miRNA: 3'- -UGCGGUCG----CCGUGCCGuAGCCac------GAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 34790 | 0.67 | 0.612506 |
Target: 5'- aACGCCGcCGGCGCGGCc-CGGgGCc- -3' miRNA: 3'- -UGCGGUcGCCGUGCCGuaGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 28670 | 0.67 | 0.621466 |
Target: 5'- gGCGCCgcguggcGGCGGCcgagGCGGuCAUCGGaccgUGcCUGg -3' miRNA: 3'- -UGCGG-------UCGCCG----UGCC-GUAGCC----AC-GAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 37196 | 0.67 | 0.622462 |
Target: 5'- gGCGCCGcGCcgaacgacgGGCGCGGCGcCGGaGCUu -3' miRNA: 3'- -UGCGGU-CG---------CCGUGCCGUaGCCaCGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 102212 | 0.67 | 0.622462 |
Target: 5'- cGCGCCGGgagucgaccgGGCGCGGC-UCGGgGCg- -3' miRNA: 3'- -UGCGGUCg---------CCGUGCCGuAGCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 69 | 0.67 | 0.632425 |
Target: 5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3' miRNA: 3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154407 | 0.67 | 0.632425 |
Target: 5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3' miRNA: 3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 150839 | 0.67 | 0.632425 |
Target: 5'- gGCGCCAgGgGGCGCcggucgGGUcgCGGcggGCUGg -3' miRNA: 3'- -UGCGGU-CgCCGUG------CCGuaGCCa--CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 142130 | 0.67 | 0.632425 |
Target: 5'- cGCGCUGcCGGaCGCGGCAcaggUGGUGCa- -3' miRNA: 3'- -UGCGGUcGCC-GUGCCGUa---GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 46474 | 0.67 | 0.63641 |
Target: 5'- cUGCCAGCGGgGaCGGCGccaacugcggaaacCGGUGCa- -3' miRNA: 3'- uGCGGUCGCCgU-GCCGUa-------------GCCACGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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