miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 3' -60.9 NC_001798.1 + 82163 0.66 0.708957
Target:  5'- aGCCGaCCACGcggCCGCgguuUCCGCCgCagcggcggcagUGCCg -3'
miRNA:   3'- -UGGC-GGUGCua-GGCG----AGGUGG-G-----------ACGG- -5'
5448 3' -60.9 NC_001798.1 + 115287 0.66 0.708957
Target:  5'- aACCcgGCCAUGGagCGCUUCGCCgCgcacGCCg -3'
miRNA:   3'- -UGG--CGGUGCUagGCGAGGUGG-Ga---CGG- -5'
5448 3' -60.9 NC_001798.1 + 71819 0.66 0.708957
Target:  5'- cCCgGCCACG--CCGCugUCCGCgCUGCUc -3'
miRNA:   3'- uGG-CGGUGCuaGGCG--AGGUGgGACGG- -5'
5448 3' -60.9 NC_001798.1 + 141481 0.66 0.708957
Target:  5'- gGCuCGCCGCGcggggggcugauGUCCGUg--GCCCUGCa -3'
miRNA:   3'- -UG-GCGGUGC------------UAGGCGaggUGGGACGg -5'
5448 3' -60.9 NC_001798.1 + 25636 0.66 0.707994
Target:  5'- uCCGCCgagcgcgGCGggCUG-UCCugCCUGCUg -3'
miRNA:   3'- uGGCGG-------UGCuaGGCgAGGugGGACGG- -5'
5448 3' -60.9 NC_001798.1 + 77410 0.66 0.703168
Target:  5'- gGCCGCCgaccugguaguccagGCGcgCCGggcCUgCGCCCaGCCg -3'
miRNA:   3'- -UGGCGG---------------UGCuaGGC---GAgGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 153181 0.66 0.699298
Target:  5'- uCCGCCGg---CCGaggCCGCCCUcGCCg -3'
miRNA:   3'- uGGCGGUgcuaGGCga-GGUGGGA-CGG- -5'
5448 3' -60.9 NC_001798.1 + 24865 0.66 0.699298
Target:  5'- gGCCGCCguGCGcgCCGUgagCCuggucgccgggGCCCUggGCCc -3'
miRNA:   3'- -UGGCGG--UGCuaGGCGa--GG-----------UGGGA--CGG- -5'
5448 3' -60.9 NC_001798.1 + 62574 0.66 0.699298
Target:  5'- cGCCGCCACGucAUCCacgaCGCCCcggagGCCc -3'
miRNA:   3'- -UGGCGGUGC--UAGGcgagGUGGGa----CGG- -5'
5448 3' -60.9 NC_001798.1 + 28078 0.66 0.699298
Target:  5'- cGCCgGCCGCGuccUCGCUCCugCggcgcuggCUGCUg -3'
miRNA:   3'- -UGG-CGGUGCua-GGCGAGGugG--------GACGG- -5'
5448 3' -60.9 NC_001798.1 + 86827 0.66 0.699298
Target:  5'- cCCGUCGC--UCCgGCUCCcgGCCCggGCCc -3'
miRNA:   3'- uGGCGGUGcuAGG-CGAGG--UGGGa-CGG- -5'
5448 3' -60.9 NC_001798.1 + 121712 0.66 0.699298
Target:  5'- cGCCGCCGCGAcggaggCgGCggcCCA-CCUGUCc -3'
miRNA:   3'- -UGGCGGUGCUa-----GgCGa--GGUgGGACGG- -5'
5448 3' -60.9 NC_001798.1 + 126748 0.66 0.699298
Target:  5'- gGCCGCaccCACGAcaUCCGCggcuuuaUCACCCcGCUc -3'
miRNA:   3'- -UGGCG---GUGCU--AGGCGa------GGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 127435 0.66 0.698329
Target:  5'- uAUCGCUGCGuUCUGCaccCCGCCCUcuuugucaacucgGCCg -3'
miRNA:   3'- -UGGCGGUGCuAGGCGa--GGUGGGA-------------CGG- -5'
5448 3' -60.9 NC_001798.1 + 33629 0.66 0.689587
Target:  5'- cCCGCCcCGG--CGC-CCACCCcGCCc -3'
miRNA:   3'- uGGCGGuGCUagGCGaGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 127853 0.66 0.689587
Target:  5'- gGCC-CCGCc--CCGCcCCACCCcGCCc -3'
miRNA:   3'- -UGGcGGUGcuaGGCGaGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 23247 0.66 0.689587
Target:  5'- -aCGuCCGCGGUCCGCggggCgUACCCggaccccaugGCCa -3'
miRNA:   3'- ugGC-GGUGCUAGGCGa---G-GUGGGa---------CGG- -5'
5448 3' -60.9 NC_001798.1 + 98288 0.66 0.689587
Target:  5'- cGCCGCCcCGA-CUGCagCCGCCCgaccuCCg -3'
miRNA:   3'- -UGGCGGuGCUaGGCGa-GGUGGGac---GG- -5'
5448 3' -60.9 NC_001798.1 + 2072 0.66 0.679832
Target:  5'- cCCGCCGCGcUCgGCggaCCACuCCgggggggGCCc -3'
miRNA:   3'- uGGCGGUGCuAGgCGa--GGUG-GGa------CGG- -5'
5448 3' -60.9 NC_001798.1 + 139312 0.66 0.679832
Target:  5'- cGCCGCCcCGcGUCCGCaUCGCCggcGCCc -3'
miRNA:   3'- -UGGCGGuGC-UAGGCGaGGUGGga-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.