miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 5' -55.3 NC_001798.1 + 41662 0.66 0.924074
Target:  5'- gGAGCGGACCGcGaGCAUggcgUGCCcGCa -3'
miRNA:   3'- gCUCGUCUGGCuCaUGUAg---ACGGcCG- -5'
5448 5' -55.3 NC_001798.1 + 152266 0.66 0.923529
Target:  5'- gGAGCucgugccGGGCCGGGguucCAUgaGCCGGg -3'
miRNA:   3'- gCUCG-------UCUGGCUCau--GUAgaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 92252 0.66 0.918514
Target:  5'- gGGGCcGAUgGGGUACGUguauggccgcgcCUGuCCGGCc -3'
miRNA:   3'- gCUCGuCUGgCUCAUGUA------------GAC-GGCCG- -5'
5448 5' -55.3 NC_001798.1 + 21624 0.67 0.913307
Target:  5'- cCGAuCcGAuCCGGGUGCGUCggugccccgcucgccGCCGGCg -3'
miRNA:   3'- -GCUcGuCU-GGCUCAUGUAGa--------------CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 10920 0.67 0.912717
Target:  5'- gGGGCAGAUCGGagACuagCUGaCGGCg -3'
miRNA:   3'- gCUCGUCUGGCUcaUGua-GACgGCCG- -5'
5448 5' -55.3 NC_001798.1 + 26933 0.67 0.906682
Target:  5'- uCGGGCGGGCgGGGU-CGg--GCgGGCg -3'
miRNA:   3'- -GCUCGUCUGgCUCAuGUagaCGgCCG- -5'
5448 5' -55.3 NC_001798.1 + 77703 0.67 0.906682
Target:  5'- gGGGCAGcAgCGAGcGCugggCcGCCGGCg -3'
miRNA:   3'- gCUCGUC-UgGCUCaUGua--GaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 146480 0.67 0.900414
Target:  5'- gCGGGCuccgGGGCCGGGc-CGg--GCCGGCa -3'
miRNA:   3'- -GCUCG----UCUGGCUCauGUagaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 134679 0.67 0.900414
Target:  5'- gCGGGuCAcGGCgCGGGUGCugCUGCCGcGCg -3'
miRNA:   3'- -GCUC-GU-CUG-GCUCAUGuaGACGGC-CG- -5'
5448 5' -55.3 NC_001798.1 + 93930 0.67 0.893913
Target:  5'- cCGcGCGGccACCGAGcGCGUCaugGCCGaGCu -3'
miRNA:   3'- -GCuCGUC--UGGCUCaUGUAGa--CGGC-CG- -5'
5448 5' -55.3 NC_001798.1 + 56519 0.67 0.893913
Target:  5'- gGAGCGGAUCGug-GCGg-UGCCGGg -3'
miRNA:   3'- gCUCGUCUGGCucaUGUagACGGCCg -5'
5448 5' -55.3 NC_001798.1 + 38716 0.67 0.891248
Target:  5'- --uGCAGGCCcccgggauguaaaAGUGCAUCgucucGCCGGCc -3'
miRNA:   3'- gcuCGUCUGGc------------UCAUGUAGa----CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 97429 0.67 0.887184
Target:  5'- cCGAGCAGugCGAcgaggaggcgcuGcGCcgCgUGCUGGCg -3'
miRNA:   3'- -GCUCGUCugGCU------------CaUGuaG-ACGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 135793 0.67 0.887184
Target:  5'- gGAGgAGGCCGuGUGCG-CgGCCcggGGCg -3'
miRNA:   3'- gCUCgUCUGGCuCAUGUaGaCGG---CCG- -5'
5448 5' -55.3 NC_001798.1 + 97632 0.67 0.887184
Target:  5'- gCGAcGCGGGCCGccgcggacGUGCGggagcGCCGGCg -3'
miRNA:   3'- -GCU-CGUCUGGCu-------CAUGUaga--CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 75452 0.67 0.887184
Target:  5'- --cGCAGGCCGGGgug----GCCGGCc -3'
miRNA:   3'- gcuCGUCUGGCUCauguagaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 6339 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 6313 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 6287 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5'
5448 5' -55.3 NC_001798.1 + 6261 0.67 0.88023
Target:  5'- gGGGaCGGGCCGGGgggACGg--GCCGGg -3'
miRNA:   3'- gCUC-GUCUGGCUCa--UGUagaCGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.