miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5449 3' -59.2 NC_001798.1 + 146899 0.66 0.835486
Target:  5'- uCCgCGcaccGGCGCGCCCUUC-UCCUCu -3'
miRNA:   3'- -GGaGCau--CUGCGCGGGGGGuAGGAGc -5'
5449 3' -59.2 NC_001798.1 + 47241 0.66 0.835486
Target:  5'- -gUCGuUGGGCG-GCCCCCgGccuuugcuUCCUCGc -3'
miRNA:   3'- ggAGC-AUCUGCgCGGGGGgU--------AGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 37348 0.66 0.835486
Target:  5'- aCCUCGgau-CGC-CCCCCCA-CCUaCGc -3'
miRNA:   3'- -GGAGCaucuGCGcGGGGGGUaGGA-GC- -5'
5449 3' -59.2 NC_001798.1 + 89073 0.66 0.833092
Target:  5'- --aCGUGGGCcuucacgaagaacaGCcgucgGCCCCCCA-CCUCGa -3'
miRNA:   3'- ggaGCAUCUG--------------CG-----CGGGGGGUaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 77924 0.66 0.827447
Target:  5'- cCCcCG-AGAaccaGCGCCaCCCCAUgCUCc -3'
miRNA:   3'- -GGaGCaUCUg---CGCGG-GGGGUAgGAGc -5'
5449 3' -59.2 NC_001798.1 + 128830 0.66 0.827447
Target:  5'- aCCcCGcGGACcccgGCGCCCCCgCggCCUCc -3'
miRNA:   3'- -GGaGCaUCUG----CGCGGGGG-GuaGGAGc -5'
5449 3' -59.2 NC_001798.1 + 113346 0.66 0.825003
Target:  5'- aCCggaCGggcGGugGCGCCggcauguauuauagCCgCCGUCCUCGc -3'
miRNA:   3'- -GGa--GCa--UCugCGCGG--------------GG-GGUAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 151624 0.66 0.819244
Target:  5'- gCCgggggCGUGGcCGCGUCCaucaggCCCG-CCUCGa -3'
miRNA:   3'- -GGa----GCAUCuGCGCGGG------GGGUaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 35348 0.66 0.819244
Target:  5'- aCUCagcuGGCGCGCCCCCCc-CCa-- -3'
miRNA:   3'- gGAGcau-CUGCGCGGGGGGuaGGagc -5'
5449 3' -59.2 NC_001798.1 + 5494 0.66 0.810884
Target:  5'- cCCUCGUcgcGGGCGggcuCGCUCCCCugcCCUUc -3'
miRNA:   3'- -GGAGCA---UCUGC----GCGGGGGGua-GGAGc -5'
5449 3' -59.2 NC_001798.1 + 122753 0.66 0.802372
Target:  5'- gCCUCGaggGGAC-CGCCCCCgacgCGUUCUUu -3'
miRNA:   3'- -GGAGCa--UCUGcGCGGGGG----GUAGGAGc -5'
5449 3' -59.2 NC_001798.1 + 109442 0.66 0.801513
Target:  5'- gCCUgCGgcuggAGGCGCGCCUCgggcaucugguggCCGcgaUCCUCGa -3'
miRNA:   3'- -GGA-GCa----UCUGCGCGGGG-------------GGU---AGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 75180 0.66 0.793719
Target:  5'- gCUCG-AGACGCugggggcccgccGCCCCCCGgagCCcccCGg -3'
miRNA:   3'- gGAGCaUCUGCG------------CGGGGGGUa--GGa--GC- -5'
5449 3' -59.2 NC_001798.1 + 36638 0.67 0.784929
Target:  5'- gCCgggCGgGGGCGCGCUuuCCCCGcgucgccCCUCGg -3'
miRNA:   3'- -GGa--GCaUCUGCGCGG--GGGGUa------GGAGC- -5'
5449 3' -59.2 NC_001798.1 + 120648 0.67 0.784929
Target:  5'- gUCUCGcGGGCcUGCCCCCCGaugaucUCCUg- -3'
miRNA:   3'- -GGAGCaUCUGcGCGGGGGGU------AGGAgc -5'
5449 3' -59.2 NC_001798.1 + 75557 0.67 0.784929
Target:  5'- gCCUgGcGGACGUggccgcccaccgGCCCCUCAUCCa-- -3'
miRNA:   3'- -GGAgCaUCUGCG------------CGGGGGGUAGGagc -5'
5449 3' -59.2 NC_001798.1 + 94189 0.67 0.775114
Target:  5'- aCCUgCG-GGcCGUGCCCCCUGcugcagcUCCUCGc -3'
miRNA:   3'- -GGA-GCaUCuGCGCGGGGGGU-------AGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 5207 0.67 0.770605
Target:  5'- uCCgUGUGGACGauCGCCCCgUcgccuggcugauauaGUCCUCGg -3'
miRNA:   3'- -GGaGCAUCUGC--GCGGGGgG---------------UAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 84880 0.67 0.766977
Target:  5'- uCCUCGaaccAGAcggcCGCGUCCCCCGcgccgUCUCGc -3'
miRNA:   3'- -GGAGCa---UCU----GCGCGGGGGGUa----GGAGC- -5'
5449 3' -59.2 NC_001798.1 + 80708 0.67 0.766977
Target:  5'- cCCgUCGUGGugGCGCUCCgCAacaccacggccUUCUCc -3'
miRNA:   3'- -GG-AGCAUCugCGCGGGGgGU-----------AGGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.