miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5449 3' -59.2 NC_001798.1 + 52754 0.76 0.283793
Target:  5'- --aCGUGGACcuuCGCCCCgCGUCCUCGg -3'
miRNA:   3'- ggaGCAUCUGc--GCGGGGgGUAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 73004 0.76 0.310328
Target:  5'- --cCGaGGACGCGCCCCCCAgCC-CGg -3'
miRNA:   3'- ggaGCaUCUGCGCGGGGGGUaGGaGC- -5'
5449 3' -59.2 NC_001798.1 + 4125 0.74 0.384718
Target:  5'- gCUCGgccgGGGCGcCGCCCCCgGggcCCUCGc -3'
miRNA:   3'- gGAGCa---UCUGC-GCGGGGGgUa--GGAGC- -5'
5449 3' -59.2 NC_001798.1 + 148842 0.73 0.409224
Target:  5'- gCCUCGgggguggGGGCGgcuucucgugccCGCCCCCCcUCCUCc -3'
miRNA:   3'- -GGAGCa------UCUGC------------GCGGGGGGuAGGAGc -5'
5449 3' -59.2 NC_001798.1 + 92341 0.73 0.434679
Target:  5'- aCgUCGccGuCGCGCCCCUCAUCgUCGg -3'
miRNA:   3'- -GgAGCauCuGCGCGGGGGGUAGgAGC- -5'
5449 3' -59.2 NC_001798.1 + 25454 0.72 0.45215
Target:  5'- cCCcCGgcGGCGCGCCCgCCGcCUUCGg -3'
miRNA:   3'- -GGaGCauCUGCGCGGGgGGUaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 98670 0.72 0.45215
Target:  5'- gCCUCcc-GGC-CGCCCCCCGUCC-CGa -3'
miRNA:   3'- -GGAGcauCUGcGCGGGGGGUAGGaGC- -5'
5449 3' -59.2 NC_001798.1 + 45088 0.72 0.461028
Target:  5'- gCCUCGUgaAGGCGCGCgCCCUggCC-CGc -3'
miRNA:   3'- -GGAGCA--UCUGCGCGgGGGGuaGGaGC- -5'
5449 3' -59.2 NC_001798.1 + 80942 0.72 0.469998
Target:  5'- cUCUCGccGACGgGCCCCCgugccugGUCCUCGu -3'
miRNA:   3'- -GGAGCauCUGCgCGGGGGg------UAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 99070 0.71 0.506722
Target:  5'- aUUCGaGGAcCGCGCCCCCguUCCcuUCGa -3'
miRNA:   3'- gGAGCaUCU-GCGCGGGGGguAGG--AGC- -5'
5449 3' -59.2 NC_001798.1 + 23338 0.71 0.516096
Target:  5'- aCCgcCGccGGCGCGCCCCCCGccggCgCUCGg -3'
miRNA:   3'- -GGa-GCauCUGCGCGGGGGGUa---G-GAGC- -5'
5449 3' -59.2 NC_001798.1 + 149696 0.71 0.525539
Target:  5'- cCCUCGcguGGCGCGUCUUCCuggcacacuUCCUCGg -3'
miRNA:   3'- -GGAGCau-CUGCGCGGGGGGu--------AGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 4933 0.71 0.535047
Target:  5'- gCC-CGgAGACGU--CCCCCGUCCUCGu -3'
miRNA:   3'- -GGaGCaUCUGCGcgGGGGGUAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 89325 0.71 0.535047
Target:  5'- aCCUCcu---CGCGCUcguCCCCGUCCUCGu -3'
miRNA:   3'- -GGAGcaucuGCGCGG---GGGGUAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 3803 0.71 0.544615
Target:  5'- gCCUCGaaccGGGCccGCGCCuCCUCcgCCUCGg -3'
miRNA:   3'- -GGAGCa---UCUG--CGCGG-GGGGuaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 78264 0.7 0.58338
Target:  5'- gCUCGgcGGCGUGCCCCUgGaCCUgGc -3'
miRNA:   3'- gGAGCauCUGCGCGGGGGgUaGGAgC- -5'
5449 3' -59.2 NC_001798.1 + 104139 0.7 0.58338
Target:  5'- gCCUCGUcGACGCcagugGCCgCCCcgCCUgGg -3'
miRNA:   3'- -GGAGCAuCUGCG-----CGGgGGGuaGGAgC- -5'
5449 3' -59.2 NC_001798.1 + 109708 0.7 0.593168
Target:  5'- cCCUCGgccgagcagcgGGaACGCGCCCgCCGgggccUCCUCa -3'
miRNA:   3'- -GGAGCa----------UC-UGCGCGGGgGGU-----AGGAGc -5'
5449 3' -59.2 NC_001798.1 + 128710 0.7 0.602982
Target:  5'- -aUgGUGGGgGCGUCCCUggaCAUCCUCGu -3'
miRNA:   3'- ggAgCAUCUgCGCGGGGG---GUAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 45594 0.7 0.602982
Target:  5'- gCCUCGUcGAcCGagGCCCCCCuccUUCUCGc -3'
miRNA:   3'- -GGAGCAuCU-GCg-CGGGGGGu--AGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.