miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5449 3' -59.2 NC_001798.1 + 134479 0.67 0.766977
Target:  5'- --gCGUGGGCGCGCCuggCCgCCAUUCgCGa -3'
miRNA:   3'- ggaGCAUCUGCGCGG---GG-GGUAGGaGC- -5'
5449 3' -59.2 NC_001798.1 + 4727 0.67 0.763331
Target:  5'- gCUCGUcGACG-GCCuCCCCGgacgccggggccgCCUCGu -3'
miRNA:   3'- gGAGCAuCUGCgCGG-GGGGUa------------GGAGC- -5'
5449 3' -59.2 NC_001798.1 + 84492 0.67 0.75783
Target:  5'- cCCUCGa--ACGCGUCCCCCGggcggCCg-- -3'
miRNA:   3'- -GGAGCaucUGCGCGGGGGGUa----GGagc -5'
5449 3' -59.2 NC_001798.1 + 122372 0.67 0.74858
Target:  5'- ---gGgcGACGCGCCCgCCCcccgcggcuGUCCUCc -3'
miRNA:   3'- ggagCauCUGCGCGGG-GGG---------UAGGAGc -5'
5449 3' -59.2 NC_001798.1 + 28062 0.67 0.74858
Target:  5'- aCCgCGgucgAGAgCGCGCCggCCgCGUCCUCGc -3'
miRNA:   3'- -GGaGCa---UCU-GCGCGG--GGgGUAGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 48775 0.67 0.74858
Target:  5'- uCCUCGgGGACGCacgGCaCCCCCGgcgauUCCcuUCGc -3'
miRNA:   3'- -GGAGCaUCUGCG---CG-GGGGGU-----AGG--AGC- -5'
5449 3' -59.2 NC_001798.1 + 147075 0.67 0.74858
Target:  5'- aCCUCGgcGGC-CGCCCCC--UCCggCGc -3'
miRNA:   3'- -GGAGCauCUGcGCGGGGGguAGGa-GC- -5'
5449 3' -59.2 NC_001798.1 + 138238 0.67 0.739235
Target:  5'- --gUGUcGAUcagGUGCCCCCCcgCCUCGu -3'
miRNA:   3'- ggaGCAuCUG---CGCGGGGGGuaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 23397 0.67 0.739235
Target:  5'- uCCUCGUcGuCgGCGUCCUCCGccUCCUCc -3'
miRNA:   3'- -GGAGCAuCuG-CGCGGGGGGU--AGGAGc -5'
5449 3' -59.2 NC_001798.1 + 17714 0.67 0.739235
Target:  5'- gCCUCGUGGcuCGUGCUggcguaccaCCCCG-CCUUGa -3'
miRNA:   3'- -GGAGCAUCu-GCGCGG---------GGGGUaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 82096 0.68 0.729804
Target:  5'- gCCUC----ACGCGCCCCgCGgucgCCUCGc -3'
miRNA:   3'- -GGAGcaucUGCGCGGGGgGUa---GGAGC- -5'
5449 3' -59.2 NC_001798.1 + 48005 0.68 0.729804
Target:  5'- gCUCcUAGACGCccccGCUCCCaCggCCUCGg -3'
miRNA:   3'- gGAGcAUCUGCG----CGGGGG-GuaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 88363 0.68 0.720294
Target:  5'- cCCUCGggcagGGGuCGCGCCagCCAcUCCUCu -3'
miRNA:   3'- -GGAGCa----UCU-GCGCGGggGGU-AGGAGc -5'
5449 3' -59.2 NC_001798.1 + 51182 0.68 0.720294
Target:  5'- gCC-CGggcGGCgGCGCCCCCCcgCCgggCGu -3'
miRNA:   3'- -GGaGCau-CUG-CGCGGGGGGuaGGa--GC- -5'
5449 3' -59.2 NC_001798.1 + 90617 0.68 0.710714
Target:  5'- --aCGUcGGCGCGCUCCaCCAccuccgCCUCGa -3'
miRNA:   3'- ggaGCAuCUGCGCGGGG-GGUa-----GGAGC- -5'
5449 3' -59.2 NC_001798.1 + 32724 0.68 0.710714
Target:  5'- cCCUgGUGGGCGCGCuggaCUUCCAcggCCUCc -3'
miRNA:   3'- -GGAgCAUCUGCGCG----GGGGGUa--GGAGc -5'
5449 3' -59.2 NC_001798.1 + 153843 0.68 0.701073
Target:  5'- gCCUCc--GGCGCcuuCCCCCCGcCCUCGc -3'
miRNA:   3'- -GGAGcauCUGCGc--GGGGGGUaGGAGC- -5'
5449 3' -59.2 NC_001798.1 + 128288 0.68 0.701073
Target:  5'- aCCUCuGgcgccuGACGCGCcgcgccCCCCCGUCCg-- -3'
miRNA:   3'- -GGAG-Cau----CUGCGCG------GGGGGUAGGagc -5'
5449 3' -59.2 NC_001798.1 + 50412 0.68 0.691377
Target:  5'- aCCg-GgcGGCGCGCCCCCCccCCa-- -3'
miRNA:   3'- -GGagCauCUGCGCGGGGGGuaGGagc -5'
5449 3' -59.2 NC_001798.1 + 98598 0.69 0.671857
Target:  5'- gCCcCGgcGGCcccgGCgGCCCCCCGcgCCUCGg -3'
miRNA:   3'- -GGaGCauCUG----CG-CGGGGGGUa-GGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.