miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 3' -60.3 NC_001798.1 + 123409 0.66 0.681777
Target:  5'- cGGGagccGCGGCCCCGccgggucACCGGGGCg---- -3'
miRNA:   3'- -UCC----CGCCGGGGCu------UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 144328 0.66 0.671814
Target:  5'- aGGGGCGGCgucgcaucgCCCGAcaGCCccaGGGGCUg--- -3'
miRNA:   3'- -UCCCGCCG---------GGGCU--UGG---UCCUGAacua -5'
5450 3' -60.3 NC_001798.1 + 137417 0.66 0.671814
Target:  5'- cGGGUccgGGUCCgGGACCGGGACc---- -3'
miRNA:   3'- uCCCG---CCGGGgCUUGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 39398 0.66 0.671814
Target:  5'- gAGGGCGccuuucGCUCCgGGACCGGGGCg---- -3'
miRNA:   3'- -UCCCGC------CGGGG-CUUGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 37898 0.67 0.66182
Target:  5'- uAGGGCcgcggauGCCCCGAGCCAGcaguUUUGGa -3'
miRNA:   3'- -UCCCGc------CGGGGCUUGGUCcu--GAACUa -5'
5450 3' -60.3 NC_001798.1 + 90407 0.67 0.66182
Target:  5'- uGGGcCGGCgcguuCCCGcGGCCGGG-CUUGAg -3'
miRNA:   3'- uCCC-GCCG-----GGGC-UUGGUCCuGAACUa -5'
5450 3' -60.3 NC_001798.1 + 34884 0.67 0.66182
Target:  5'- cGGGCGGCuaCCCGGgacccccgGCCGGGAaucGAa -3'
miRNA:   3'- uCCCGCCG--GGGCU--------UGGUCCUgaaCUa -5'
5450 3' -60.3 NC_001798.1 + 98602 0.67 0.66182
Target:  5'- -cGGCGGCCCCGGcggccccccgcGCCucGGGCggcgUGGc -3'
miRNA:   3'- ucCCGCCGGGGCU-----------UGGu-CCUGa---ACUa -5'
5450 3' -60.3 NC_001798.1 + 120224 0.67 0.66182
Target:  5'- cGGGCcguuGGCCCCcgccgaGGCCAGGAUgcGGUg -3'
miRNA:   3'- uCCCG----CCGGGGc-----UUGGUCCUGaaCUA- -5'
5450 3' -60.3 NC_001798.1 + 34798 0.67 0.66182
Target:  5'- cGGcGCGGCCCgGGGCCccGGGGCc---- -3'
miRNA:   3'- uCC-CGCCGGGgCUUGG--UCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 138746 0.67 0.655813
Target:  5'- --cGCGGCCCCGGcgaccguggccagcuGCCGGGGCa---- -3'
miRNA:   3'- uccCGCCGGGGCU---------------UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 5617 0.67 0.651803
Target:  5'- cGGGCGGCUCCGccCCaaagGGGGCggGGc -3'
miRNA:   3'- uCCCGCCGGGGCuuGG----UCCUGaaCUa -5'
5450 3' -60.3 NC_001798.1 + 98496 0.67 0.645786
Target:  5'- cGGGCGGCgggagcgacgcgccCCCGuagGCCcgccaugcgcggggGGGGCUUGAUu -3'
miRNA:   3'- uCCCGCCG--------------GGGCu--UGG--------------UCCUGAACUA- -5'
5450 3' -60.3 NC_001798.1 + 95010 0.67 0.641772
Target:  5'- cAGGGCGGCgcgggCCUGGagGCCGGGGCccgcgcgcUGAUg -3'
miRNA:   3'- -UCCCGCCG-----GGGCU--UGGUCCUGa-------ACUA- -5'
5450 3' -60.3 NC_001798.1 + 2816 0.67 0.641772
Target:  5'- cGGGCccagGGCCCCGGcgACCAGG-CUc--- -3'
miRNA:   3'- uCCCG----CCGGGGCU--UGGUCCuGAacua -5'
5450 3' -60.3 NC_001798.1 + 3790 0.67 0.631733
Target:  5'- cGGGGCgcccgaGGCCUCGAACCGGGcccGCg---- -3'
miRNA:   3'- -UCCCG------CCGGGGCUUGGUCC---UGaacua -5'
5450 3' -60.3 NC_001798.1 + 22809 0.67 0.631733
Target:  5'- -cGGCGGCCCCGGAUCuccGGAUc---- -3'
miRNA:   3'- ucCCGCCGGGGCUUGGu--CCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 28173 0.67 0.631733
Target:  5'- uGGGCGaacagccCCCCGAGCgAGGGCggGGg -3'
miRNA:   3'- uCCCGCc------GGGGCUUGgUCCUGaaCUa -5'
5450 3' -60.3 NC_001798.1 + 69522 0.67 0.631733
Target:  5'- cGGGGCguGGCCCgCGAGCUcgcgcGGGCUggUGGUg -3'
miRNA:   3'- -UCCCG--CCGGG-GCUUGGu----CCUGA--ACUA- -5'
5450 3' -60.3 NC_001798.1 + 114002 0.67 0.631733
Target:  5'- aGGGGCuuGGCcuuCCCGAGCUcGG-CUUGAUg -3'
miRNA:   3'- -UCCCG--CCG---GGGCUUGGuCCuGAACUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.