miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 5' -64.3 NC_001798.1 + 44889 0.67 0.476094
Target:  5'- --uUCCGGGauggcguCCCuGCUCGGGugcuguGCGGUUg -3'
miRNA:   3'- gguAGGCCC-------GGGuCGAGCCC------CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 32002 0.67 0.476094
Target:  5'- gCCGcgCCGGGCCCcggacucGGaCUCGGGcgaccGCGGcCa -3'
miRNA:   3'- -GGUa-GGCCCGGG-------UC-GAGCCC-----CGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 57197 0.67 0.468147
Target:  5'- aCGUgCGGGUCCguucGGUUgGGGGCGcuGUCa -3'
miRNA:   3'- gGUAgGCCCGGG----UCGAgCCCCGC--CAG- -5'
5450 5' -64.3 NC_001798.1 + 4484 0.67 0.468147
Target:  5'- cCgGUCCGcGGaCCCAGCggcccgCGucGCGGUCg -3'
miRNA:   3'- -GgUAGGC-CC-GGGUCGa-----GCccCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 84835 0.67 0.50123
Target:  5'- gCGUCCGuGGUcgggaauauaaccuCUAGUUCGGcGGgGGUCa -3'
miRNA:   3'- gGUAGGC-CCG--------------GGUCGAGCC-CCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 73702 0.67 0.503958
Target:  5'- cCCAUaaaCaGGCCCcGCUCGuGGCGGg- -3'
miRNA:   3'- -GGUAg--GcCCGGGuCGAGCcCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 76925 0.67 0.526005
Target:  5'- gCCGUCCGGgGCCCccccccggaagucacGGCggCGcugcGGGCGGa- -3'
miRNA:   3'- -GGUAGGCC-CGGG---------------UCGa-GC----CCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 129353 0.67 0.522305
Target:  5'- gCCcgCCGGGCCUGGC--GGGGCccccGGa- -3'
miRNA:   3'- -GGuaGGCCCGGGUCGagCCCCG----CCag -5'
5450 5' -64.3 NC_001798.1 + 39413 0.67 0.522305
Target:  5'- uCCGggaCCGGGgCgCGGCcguccgcgugCGGGGgGGUCa -3'
miRNA:   3'- -GGUa--GGCCCgG-GUCGa---------GCCCCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 75839 0.67 0.522305
Target:  5'- uCCAUCgGaucaggcgcuGGCCCAGUUugccCGGGGCgaagagaugcgGGUCg -3'
miRNA:   3'- -GGUAGgC----------CCGGGUCGA----GCCCCG-----------CCAG- -5'
5450 5' -64.3 NC_001798.1 + 69562 0.67 0.513098
Target:  5'- uCCAcggcacUCUcGGCCCAcGCcaUCGGGGCuGUCg -3'
miRNA:   3'- -GGU------AGGcCCGGGU-CG--AGCCCCGcCAG- -5'
5450 5' -64.3 NC_001798.1 + 122621 0.67 0.513098
Target:  5'- uCUAUCCGGGCCgC-GCUCcaaGGCGGcCc -3'
miRNA:   3'- -GGUAGGCCCGG-GuCGAGcc-CCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 90416 0.67 0.503958
Target:  5'- gCGUucCCGcGGCCgGGCUUGaGGCGGUa -3'
miRNA:   3'- gGUA--GGC-CCGGgUCGAGCcCCGCCAg -5'
5450 5' -64.3 NC_001798.1 + 128393 0.68 0.417023
Target:  5'- gCCAgcUCUGGGCCCuGCUucggCGGGGCc--- -3'
miRNA:   3'- -GGU--AGGCCCGGGuCGA----GCCCCGccag -5'
5450 5' -64.3 NC_001798.1 + 4045 0.68 0.417023
Target:  5'- gCCG-CgCGGGCCCGGCggcgcuccaggCGGcccGCGGUCg -3'
miRNA:   3'- -GGUaG-GCCCGGGUCGa----------GCCc--CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 151155 0.68 0.425308
Target:  5'- gUCGUCCGuGCCgGGCcaCGGGGgGGUg -3'
miRNA:   3'- -GGUAGGCcCGGgUCGa-GCCCCgCCAg -5'
5450 5' -64.3 NC_001798.1 + 44960 0.68 0.432847
Target:  5'- -gAUUCGGGCCgCGGCuccgcccUCGGaGGCGGa- -3'
miRNA:   3'- ggUAGGCCCGG-GUCG-------AGCC-CCGCCag -5'
5450 5' -64.3 NC_001798.1 + 128959 0.68 0.442167
Target:  5'- gCguUCCGGGCCCGGa--GGaGGCGcucGUCa -3'
miRNA:   3'- -GguAGGCCCGGGUCgagCC-CCGC---CAG- -5'
5450 5' -64.3 NC_001798.1 + 26197 0.68 0.450738
Target:  5'- aCggCCGGGCCgCcGcCUCGGGcGCGGg- -3'
miRNA:   3'- gGuaGGCCCGG-GuC-GAGCCC-CGCCag -5'
5450 5' -64.3 NC_001798.1 + 57445 0.68 0.417023
Target:  5'- -uGUCUucggGGGCCCGGuCUUggGGGGCGGg- -3'
miRNA:   3'- ggUAGG----CCCGGGUC-GAG--CCCCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.