Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5450 | 5' | -64.3 | NC_001798.1 | + | 129353 | 0.67 | 0.522305 |
Target: 5'- gCCcgCCGGGCCUGGC--GGGGCccccGGa- -3' miRNA: 3'- -GGuaGGCCCGGGUCGagCCCCG----CCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 69562 | 0.67 | 0.513098 |
Target: 5'- uCCAcggcacUCUcGGCCCAcGCcaUCGGGGCuGUCg -3' miRNA: 3'- -GGU------AGGcCCGGGU-CG--AGCCCCGcCAG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 122621 | 0.67 | 0.513098 |
Target: 5'- uCUAUCCGGGCCgC-GCUCcaaGGCGGcCc -3' miRNA: 3'- -GGUAGGCCCGG-GuCGAGcc-CCGCCaG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 90416 | 0.67 | 0.503958 |
Target: 5'- gCGUucCCGcGGCCgGGCUUGaGGCGGUa -3' miRNA: 3'- gGUA--GGC-CCGGgUCGAGCcCCGCCAg -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 73702 | 0.67 | 0.503958 |
Target: 5'- cCCAUaaaCaGGCCCcGCUCGuGGCGGg- -3' miRNA: 3'- -GGUAg--GcCCGGGuCGAGCcCCGCCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 84835 | 0.67 | 0.50123 |
Target: 5'- gCGUCCGuGGUcgggaauauaaccuCUAGUUCGGcGGgGGUCa -3' miRNA: 3'- gGUAGGC-CCG--------------GGUCGAGCC-CCgCCAG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 125650 | 0.67 | 0.494889 |
Target: 5'- aCAUCgCGGGCgaGGCg-GGGGCGGc- -3' miRNA: 3'- gGUAG-GCCCGggUCGagCCCCGCCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 12497 | 0.67 | 0.485896 |
Target: 5'- cCCAcaCGGGCCCAGagguacaCGGGaGCGGg- -3' miRNA: 3'- -GGUagGCCCGGGUCga-----GCCC-CGCCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 7176 | 0.67 | 0.476981 |
Target: 5'- aCCga-CGGGCCCccGCacCGGGGCGG-Cg -3' miRNA: 3'- -GGuagGCCCGGGu-CGa-GCCCCGCCaG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 32002 | 0.67 | 0.476094 |
Target: 5'- gCCGcgCCGGGCCCcggacucGGaCUCGGGcgaccGCGGcCa -3' miRNA: 3'- -GGUa-GGCCCGGG-------UC-GAGCCC-----CGCCaG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 44889 | 0.67 | 0.476094 |
Target: 5'- --uUCCGGGauggcguCCCuGCUCGGGugcuguGCGGUUg -3' miRNA: 3'- gguAGGCCC-------GGGuCGAGCCC------CGCCAG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 57197 | 0.67 | 0.468147 |
Target: 5'- aCGUgCGGGUCCguucGGUUgGGGGCGcuGUCa -3' miRNA: 3'- gGUAgGCCCGGG----UCGAgCCCCGC--CAG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 4484 | 0.67 | 0.468147 |
Target: 5'- cCgGUCCGcGGaCCCAGCggcccgCGucGCGGUCg -3' miRNA: 3'- -GgUAGGC-CC-GGGUCGa-----GCccCGCCAG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 29914 | 0.68 | 0.459399 |
Target: 5'- -gGUCgCGGGCggUgGGCUCgGGGGCGGg- -3' miRNA: 3'- ggUAG-GCCCG--GgUCGAG-CCCCGCCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 26197 | 0.68 | 0.450738 |
Target: 5'- aCggCCGGGCCgCcGcCUCGGGcGCGGg- -3' miRNA: 3'- gGuaGGCCCGG-GuC-GAGCCC-CGCCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 128959 | 0.68 | 0.442167 |
Target: 5'- gCguUCCGGGCCCGGa--GGaGGCGcucGUCa -3' miRNA: 3'- -GguAGGCCCGGGUCgagCC-CCGC---CAG- -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 44960 | 0.68 | 0.432847 |
Target: 5'- -gAUUCGGGCCgCGGCuccgcccUCGGaGGCGGa- -3' miRNA: 3'- ggUAGGCCCGG-GUCG-------AGCC-CCGCCag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 151155 | 0.68 | 0.425308 |
Target: 5'- gUCGUCCGuGCCgGGCcaCGGGGgGGUg -3' miRNA: 3'- -GGUAGGCcCGGgUCGa-GCCCCgCCAg -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 128393 | 0.68 | 0.417023 |
Target: 5'- gCCAgcUCUGGGCCCuGCUucggCGGGGCc--- -3' miRNA: 3'- -GGU--AGGCCCGGGuCGA----GCCCCGccag -5' |
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5450 | 5' | -64.3 | NC_001798.1 | + | 57445 | 0.68 | 0.417023 |
Target: 5'- -uGUCUucggGGGCCCGGuCUUggGGGGCGGg- -3' miRNA: 3'- ggUAGG----CCCGGGUC-GAG--CCCCGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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