miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5451 3' -58.9 NC_001798.1 + 53238 0.66 0.827831
Target:  5'- cUCAGcGcGGCCguGGGCGUC-CUGcggcagcgcGCCg -3'
miRNA:   3'- -AGUC-CaCCGGguCCUGCAGcGAC---------UGG- -5'
5451 3' -58.9 NC_001798.1 + 15048 0.66 0.827831
Target:  5'- -uGGGgcggaugGGCCCGGGGCG-CGCgGGg- -3'
miRNA:   3'- agUCCa------CCGGGUCCUGCaGCGaCUgg -5'
5451 3' -58.9 NC_001798.1 + 39551 0.66 0.827009
Target:  5'- -uGGGUGGCgCCGGGGcCGUccguccgCGCcGACg -3'
miRNA:   3'- agUCCACCG-GGUCCU-GCA-------GCGaCUGg -5'
5451 3' -58.9 NC_001798.1 + 23556 0.66 0.826186
Target:  5'- gCGGGggugcccgcgagGGCCCcgGGGGCGgCGCcccGGCCg -3'
miRNA:   3'- aGUCCa-----------CCGGG--UCCUGCaGCGa--CUGG- -5'
5451 3' -58.9 NC_001798.1 + 152252 0.66 0.819538
Target:  5'- cCGGGguccGCCCGGGAgcUCGUgccgGGCCg -3'
miRNA:   3'- aGUCCac--CGGGUCCUgcAGCGa---CUGG- -5'
5451 3' -58.9 NC_001798.1 + 120753 0.66 0.819538
Target:  5'- uUCAGGUauagcaggaacaGGCCguGG-CGUUGgUGugCg -3'
miRNA:   3'- -AGUCCA------------CCGGguCCuGCAGCgACugG- -5'
5451 3' -58.9 NC_001798.1 + 79096 0.66 0.819538
Target:  5'- cCAGGUa--CCAGGGCGUC-CUGggcGCCa -3'
miRNA:   3'- aGUCCAccgGGUCCUGCAGcGAC---UGG- -5'
5451 3' -58.9 NC_001798.1 + 51668 0.66 0.8187
Target:  5'- -aAGGUGuuuuuccGCCagacgcugcagCAGGGCGaggCGCUGGCCu -3'
miRNA:   3'- agUCCAC-------CGG-----------GUCCUGCa--GCGACUGG- -5'
5451 3' -58.9 NC_001798.1 + 68770 0.66 0.811084
Target:  5'- aCGGGgccuGCCCGGGugGcCGgUGugUg -3'
miRNA:   3'- aGUCCac--CGGGUCCugCaGCgACugG- -5'
5451 3' -58.9 NC_001798.1 + 113338 0.66 0.811084
Target:  5'- aCGGGUGGaCC-GGACGggCGgUGGCg -3'
miRNA:   3'- aGUCCACCgGGuCCUGCa-GCgACUGg -5'
5451 3' -58.9 NC_001798.1 + 5911 0.66 0.811084
Target:  5'- -gAGGcgGGCCC-GGACGggggGCgGGCCg -3'
miRNA:   3'- agUCCa-CCGGGuCCUGCag--CGaCUGG- -5'
5451 3' -58.9 NC_001798.1 + 132835 0.66 0.802475
Target:  5'- uUCuGG-GGCCac-GACGccgCGCUGACCc -3'
miRNA:   3'- -AGuCCaCCGGgucCUGCa--GCGACUGG- -5'
5451 3' -58.9 NC_001798.1 + 153334 0.66 0.802475
Target:  5'- cUCGGGccucgGGCuCCAGGcACGgucCGaUGACCg -3'
miRNA:   3'- -AGUCCa----CCG-GGUCC-UGCa--GCgACUGG- -5'
5451 3' -58.9 NC_001798.1 + 134335 0.66 0.802475
Target:  5'- aCGGGUcuggucgugagGGUCgaaAGGGCGUCGUggGGCCc -3'
miRNA:   3'- aGUCCA-----------CCGGg--UCCUGCAGCGa-CUGG- -5'
5451 3' -58.9 NC_001798.1 + 111403 0.66 0.79372
Target:  5'- uUUGGGUcgGGCUCAGGGCcagCGC-GGCCc -3'
miRNA:   3'- -AGUCCA--CCGGGUCCUGca-GCGaCUGG- -5'
5451 3' -58.9 NC_001798.1 + 83786 0.66 0.79372
Target:  5'- cCGGGgGGCCC-GGACG-CGg-GGCCc -3'
miRNA:   3'- aGUCCaCCGGGuCCUGCaGCgaCUGG- -5'
5451 3' -58.9 NC_001798.1 + 116134 0.66 0.79372
Target:  5'- cCuGGUGGCCC---ACGUCGaggccCUGGCCc -3'
miRNA:   3'- aGuCCACCGGGuccUGCAGC-----GACUGG- -5'
5451 3' -58.9 NC_001798.1 + 35468 0.66 0.79372
Target:  5'- gUCuGcUGGCCCGcGGccCGUCuGCUGGCCc -3'
miRNA:   3'- -AGuCcACCGGGU-CCu-GCAG-CGACUGG- -5'
5451 3' -58.9 NC_001798.1 + 10896 0.66 0.784827
Target:  5'- uUCGGGUGGCaggagccgucggUCGGGGCagaUCGgaGACUa -3'
miRNA:   3'- -AGUCCACCG------------GGUCCUGc--AGCgaCUGG- -5'
5451 3' -58.9 NC_001798.1 + 37585 0.67 0.775804
Target:  5'- -gGGGUGGUCgC-GGugGUCGUcguuaucaucuUGGCCu -3'
miRNA:   3'- agUCCACCGG-GuCCugCAGCG-----------ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.