miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5451 5' -59.5 NC_001798.1 + 148181 0.66 0.759629
Target:  5'- uGGGCCGUGUugUGg--UGGGCCgUGUg -3'
miRNA:   3'- uCCCGGUACGugACguaGCUCGG-GCA- -5'
5451 5' -59.5 NC_001798.1 + 86089 0.66 0.759629
Target:  5'- cGGGGCCccggcUGCGCgccGCcgCGGacGCCCGc -3'
miRNA:   3'- -UCCCGGu----ACGUGa--CGuaGCU--CGGGCa -5'
5451 5' -59.5 NC_001798.1 + 10625 0.66 0.759629
Target:  5'- cGGGGCgcgCAUGCACgccGCAuccacgaccgucUCGAGCacCCGUc -3'
miRNA:   3'- -UCCCG---GUACGUGa--CGU------------AGCUCG--GGCA- -5'
5451 5' -59.5 NC_001798.1 + 45191 0.66 0.758686
Target:  5'- cGGGGCCGuUGCGgcGCAUCGGgacaagaugcgccGCCUGg -3'
miRNA:   3'- -UCCCGGU-ACGUgaCGUAGCU-------------CGGGCa -5'
5451 5' -59.5 NC_001798.1 + 25863 0.66 0.753955
Target:  5'- --cGCCGUGCGCgccGCGgacuggcccgccgaCGGGCCCGUg -3'
miRNA:   3'- uccCGGUACGUGa--CGUa-------------GCUCGGGCA- -5'
5451 5' -59.5 NC_001798.1 + 27288 0.66 0.750151
Target:  5'- gGGGGag--GgGCUGCcgCGAGCUCGg -3'
miRNA:   3'- -UCCCgguaCgUGACGuaGCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 40993 0.66 0.750151
Target:  5'- gAGGGCCAcgaaGCGgaGCAgcagcUCGcAGCCCa- -3'
miRNA:   3'- -UCCCGGUa---CGUgaCGU-----AGC-UCGGGca -5'
5451 5' -59.5 NC_001798.1 + 48814 0.66 0.750151
Target:  5'- gAGGGCCccgGCcuuuuuCUGUcgCGGGuCCCGg -3'
miRNA:   3'- -UCCCGGua-CGu-----GACGuaGCUC-GGGCa -5'
5451 5' -59.5 NC_001798.1 + 53943 0.66 0.750151
Target:  5'- cGGGCUcgAUGCAgUGCAU--GGCCCu- -3'
miRNA:   3'- uCCCGG--UACGUgACGUAgcUCGGGca -5'
5451 5' -59.5 NC_001798.1 + 146697 0.66 0.750151
Target:  5'- gGGGGCgcgcagcugaGUGCuCUGCGguugCGGGCgCCGUg -3'
miRNA:   3'- -UCCCGg---------UACGuGACGUa---GCUCG-GGCA- -5'
5451 5' -59.5 NC_001798.1 + 34816 0.66 0.750151
Target:  5'- cGGGGCCcccGCGCUccGCcggGGGCCCGg -3'
miRNA:   3'- -UCCCGGua-CGUGA--CGuagCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 89673 0.66 0.750151
Target:  5'- ---aCCccGCGCUGCG-CGGGCCCGg -3'
miRNA:   3'- ucccGGuaCGUGACGUaGCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 124329 0.66 0.750151
Target:  5'- uGGGCCGggacgGCGCggaaaGCGUCauccGCCCGa -3'
miRNA:   3'- uCCCGGUa----CGUGa----CGUAGcu--CGGGCa -5'
5451 5' -59.5 NC_001798.1 + 26560 0.66 0.740572
Target:  5'- cGGGGCUGgcCACgccgccgagGCG-CGAGCCCGUg -3'
miRNA:   3'- -UCCCGGUacGUGa--------CGUaGCUCGGGCA- -5'
5451 5' -59.5 NC_001798.1 + 57401 0.66 0.734779
Target:  5'- cGGGCCAgcgggucguggcgguUGCAUcGCA-CGGGCuCCGa -3'
miRNA:   3'- uCCCGGU---------------ACGUGaCGUaGCUCG-GGCa -5'
5451 5' -59.5 NC_001798.1 + 24666 0.66 0.7309
Target:  5'- uGGcGGCCGUGCcgggGCUGgccgGAGCCCGg -3'
miRNA:   3'- -UC-CCGGUACG----UGACguagCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 54802 0.66 0.721145
Target:  5'- --cGCCAUGCccGCggGCGUCGGGCuuGg -3'
miRNA:   3'- uccCGGUACG--UGa-CGUAGCUCGggCa -5'
5451 5' -59.5 NC_001798.1 + 150045 0.66 0.720165
Target:  5'- cGGGGCCcgGCGCgGCGcCGcccucuuGGCCCc- -3'
miRNA:   3'- -UCCCGGuaCGUGaCGUaGC-------UCGGGca -5'
5451 5' -59.5 NC_001798.1 + 29633 0.66 0.717221
Target:  5'- cGGGCCGcauucgcaccccgGCACUGCGagCGAcggagcggcgGCCCGg -3'
miRNA:   3'- uCCCGGUa------------CGUGACGUa-GCU----------CGGGCa -5'
5451 5' -59.5 NC_001798.1 + 111416 0.66 0.711314
Target:  5'- cAGGGCCA-GCGCgGCccCGAgaaacGCCCGc -3'
miRNA:   3'- -UCCCGGUaCGUGaCGuaGCU-----CGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.