miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5451 5' -59.5 NC_001798.1 + 148690 0.66 0.711314
Target:  5'- -cGGCCAgacgUGCugcuCUGCAcgaUCGGGCCCc- -3'
miRNA:   3'- ucCCGGU----ACGu---GACGU---AGCUCGGGca -5'
5451 5' -59.5 NC_001798.1 + 136700 0.66 0.708352
Target:  5'- uGGGCCAUGUaccaguggggcaggACUGCucgucGUCGAagggcuucacGCCCGc -3'
miRNA:   3'- uCCCGGUACG--------------UGACG-----UAGCU----------CGGGCa -5'
5451 5' -59.5 NC_001798.1 + 26295 0.67 0.701418
Target:  5'- uGGGGCCuggGCGC-GCcgCugcGGCCCGUc -3'
miRNA:   3'- -UCCCGGua-CGUGaCGuaGc--UCGGGCA- -5'
5451 5' -59.5 NC_001798.1 + 143910 0.67 0.700426
Target:  5'- cAGGGUCGUGUucaacaacagcacGCcGUcgCGAGCCCa- -3'
miRNA:   3'- -UCCCGGUACG-------------UGaCGuaGCUCGGGca -5'
5451 5' -59.5 NC_001798.1 + 72144 0.67 0.691465
Target:  5'- -cGGCCAcccggGC-CgGCGUCGGGCCCa- -3'
miRNA:   3'- ucCCGGUa----CGuGaCGUAGCUCGGGca -5'
5451 5' -59.5 NC_001798.1 + 39475 0.67 0.691465
Target:  5'- gGGGGCCugGCGCgugccucgugGCcgCGGGCCCc- -3'
miRNA:   3'- -UCCCGGuaCGUGa---------CGuaGCUCGGGca -5'
5451 5' -59.5 NC_001798.1 + 56641 0.67 0.681464
Target:  5'- -cGGCCGUGCagACcGCAUgGucGCCCGUa -3'
miRNA:   3'- ucCCGGUACG--UGaCGUAgCu-CGGGCA- -5'
5451 5' -59.5 NC_001798.1 + 121543 0.67 0.681464
Target:  5'- -cGGCgcUGCGCcugGCGUgGGGCCCGUg -3'
miRNA:   3'- ucCCGguACGUGa--CGUAgCUCGGGCA- -5'
5451 5' -59.5 NC_001798.1 + 25479 0.67 0.681464
Target:  5'- -cGGCCcgcUGCGC-GCcUCGGGCCCGc -3'
miRNA:   3'- ucCCGGu--ACGUGaCGuAGCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 93558 0.67 0.670418
Target:  5'- -uGGCCAUGCugUGCGgguucucUCcGGCCCu- -3'
miRNA:   3'- ucCCGGUACGugACGU-------AGcUCGGGca -5'
5451 5' -59.5 NC_001798.1 + 101768 0.67 0.661352
Target:  5'- uGGGCC--GCGCUGCuggCGuuaacuaaGGCCCGg -3'
miRNA:   3'- uCCCGGuaCGUGACGua-GC--------UCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 153306 0.67 0.661352
Target:  5'- uGGGCCcggGCucggGC-UCGGGCCCGa -3'
miRNA:   3'- uCCCGGua-CGuga-CGuAGCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 11985 0.67 0.661352
Target:  5'- cGGGGCUGUGgGCguggUGCGUCGAGCg--- -3'
miRNA:   3'- -UCCCGGUACgUG----ACGUAGCUCGggca -5'
5451 5' -59.5 NC_001798.1 + 140768 0.67 0.661352
Target:  5'- cGGGGCaCGUGCGCUgugaggugcacaGCAagcaacagcuagUCGuGGCCCGg -3'
miRNA:   3'- -UCCCG-GUACGUGA------------CGU------------AGC-UCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 35538 0.67 0.651256
Target:  5'- -cGGCCG-GCGCgggGCGUUGccGGCCCGg -3'
miRNA:   3'- ucCCGGUaCGUGa--CGUAGC--UCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 139292 0.67 0.651256
Target:  5'- gGGGGCgCAUaGCGCcGCGUCGccGCCCc- -3'
miRNA:   3'- -UCCCG-GUA-CGUGaCGUAGCu-CGGGca -5'
5451 5' -59.5 NC_001798.1 + 83802 0.67 0.651256
Target:  5'- cGGGGCCcgGaacaACUGCA-CG-GCCUGa -3'
miRNA:   3'- -UCCCGGuaCg---UGACGUaGCuCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 2203 0.67 0.651256
Target:  5'- -aGGCCGccGCGCggcGCAgCGGGCCCGa -3'
miRNA:   3'- ucCCGGUa-CGUGa--CGUaGCUCGGGCa -5'
5451 5' -59.5 NC_001798.1 + 41206 0.67 0.651256
Target:  5'- cGGGGCCAccaUGCugUGCG-CGGGaCUCa- -3'
miRNA:   3'- -UCCCGGU---ACGugACGUaGCUC-GGGca -5'
5451 5' -59.5 NC_001798.1 + 108155 0.68 0.639124
Target:  5'- gGGGGCCAUGaCACguacuggacggaGCAaaUCGA-CCCGUg -3'
miRNA:   3'- -UCCCGGUAC-GUGa-----------CGU--AGCUcGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.