miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5452 3' -62.5 NC_001798.1 + 29398 0.66 0.636269
Target:  5'- --aGGGCCGcGC---CGGCGGGGCgCCGg -3'
miRNA:   3'- gugCUUGGC-CGcuaGCCGCCCCG-GGU- -5'
5452 3' -62.5 NC_001798.1 + 46655 0.66 0.636269
Target:  5'- gACGAgACCGaGC-AUCacGUGGGGCCCGg -3'
miRNA:   3'- gUGCU-UGGC-CGcUAGc-CGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 70228 0.66 0.636269
Target:  5'- aGCGAGCCGGCGggCaGCGcGGacgaGCCg- -3'
miRNA:   3'- gUGCUUGGCCGCuaGcCGC-CC----CGGgu -5'
5452 3' -62.5 NC_001798.1 + 153818 0.66 0.636269
Target:  5'- gGCGGcgGCaGGCGcggCGuGCGGGGCCUc -3'
miRNA:   3'- gUGCU--UGgCCGCua-GC-CGCCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 71084 0.66 0.636269
Target:  5'- cCGCGucAGCCcGCGGUCGGCGuGcGcGCCCc -3'
miRNA:   3'- -GUGC--UUGGcCGCUAGCCGC-C-C-CGGGu -5'
5452 3' -62.5 NC_001798.1 + 96012 0.66 0.636269
Target:  5'- cCGCGAAUcaCGGCacacCGGCGGGGCg-- -3'
miRNA:   3'- -GUGCUUG--GCCGcua-GCCGCCCCGggu -5'
5452 3' -62.5 NC_001798.1 + 21722 0.66 0.633348
Target:  5'- cCGCGcAGCCGGUGugccccuggugCGGCGGcgaccgggacgccGGCCCu -3'
miRNA:   3'- -GUGC-UUGGCCGCua---------GCCGCC-------------CCGGGu -5'
5452 3' -62.5 NC_001798.1 + 5720 0.66 0.626534
Target:  5'- uGCGAgcGCUGGCGccCuGCccGGGGCCCGc -3'
miRNA:   3'- gUGCU--UGGCCGCuaGcCG--CCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 72205 0.66 0.626534
Target:  5'- gCGCGAGCUGuacGUGAUCGccaGgGGGGCCg- -3'
miRNA:   3'- -GUGCUUGGC---CGCUAGC---CgCCCCGGgu -5'
5452 3' -62.5 NC_001798.1 + 126579 0.66 0.626534
Target:  5'- aCACGAcCCuGGaGAUCccCGGGGCCCGc -3'
miRNA:   3'- -GUGCUuGG-CCgCUAGccGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 36525 0.66 0.626534
Target:  5'- gCGCGGcgGCCgGGCGGgggCGcGCGGcGGCCgGg -3'
miRNA:   3'- -GUGCU--UGG-CCGCUa--GC-CGCC-CCGGgU- -5'
5452 3' -62.5 NC_001798.1 + 36567 0.66 0.626534
Target:  5'- gCGCGGcgGCCgGGCGGgggCGcGCGGcGGCCgGg -3'
miRNA:   3'- -GUGCU--UGG-CCGCUa--GC-CGCC-CCGGgU- -5'
5452 3' -62.5 NC_001798.1 + 36609 0.66 0.626534
Target:  5'- gCGCGGcgGCCgGGCGGgggCGcGCGGcGGCCgGg -3'
miRNA:   3'- -GUGCU--UGG-CCGCUa--GC-CGCC-CCGGgU- -5'
5452 3' -62.5 NC_001798.1 + 2764 0.66 0.616803
Target:  5'- cCGCGGcGgCGGCGG-CGGCGGaGCUCAg -3'
miRNA:   3'- -GUGCU-UgGCCGCUaGCCGCCcCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 137617 0.66 0.61583
Target:  5'- --gGAGCCGGUGAugagcgcgcccgcUCGG-GGGGCgCGa -3'
miRNA:   3'- gugCUUGGCCGCU-------------AGCCgCCCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 41175 0.67 0.610969
Target:  5'- uGCG-GCCGGCGuaguucaaaagauagGUCGcCGGGGCCa- -3'
miRNA:   3'- gUGCuUGGCCGC---------------UAGCcGCCCCGGgu -5'
5452 3' -62.5 NC_001798.1 + 57157 0.67 0.607082
Target:  5'- cCGCGGGCUGGCGccCGGgcCGGcGCCCu -3'
miRNA:   3'- -GUGCUUGGCCGCuaGCC--GCCcCGGGu -5'
5452 3' -62.5 NC_001798.1 + 150751 0.67 0.597378
Target:  5'- gCACGAcgGCC-GCGA-CGGCaGGGCCg- -3'
miRNA:   3'- -GUGCU--UGGcCGCUaGCCGcCCCGGgu -5'
5452 3' -62.5 NC_001798.1 + 127921 0.67 0.597378
Target:  5'- cCACGugggcAACC--CGA-CGGCGGGGCCCc -3'
miRNA:   3'- -GUGC-----UUGGccGCUaGCCGCCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 74338 0.67 0.597378
Target:  5'- cCACG-ACCGccccaagguGCGGUgGGCGGGcGCCa- -3'
miRNA:   3'- -GUGCuUGGC---------CGCUAgCCGCCC-CGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.