Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5452 | 5' | -54.9 | NC_001798.1 | + | 1255 | 0.66 | 0.944955 |
Target: 5'- gGCGgGCccgcGUCCGCguCGUCgCGCAGCAc -3' miRNA: 3'- gUGCaUGaa--CAGGCG--GCAG-GUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 77645 | 0.66 | 0.944507 |
Target: 5'- gACGaACUUGaggCCGCCGUCgCcgaccugACGGCGa -3' miRNA: 3'- gUGCaUGAACa--GGCGGCAG-G-------UGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 131081 | 0.66 | 0.940365 |
Target: 5'- gGCGUACacggCCGCCG-CCagcaACAGCGu -3' miRNA: 3'- gUGCAUGaacaGGCGGCaGG----UGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 83831 | 0.66 | 0.935534 |
Target: 5'- gCACGgacggGCcgGUCC-CCGUCCggGCGGCGc -3' miRNA: 3'- -GUGCa----UGaaCAGGcGGCAGG--UGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 72594 | 0.67 | 0.919591 |
Target: 5'- uCGCGggGCUgcgGUCCGUCGUCaccgagacgACGGCGc -3' miRNA: 3'- -GUGCa-UGAa--CAGGCGGCAGg--------UGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 70545 | 0.67 | 0.919591 |
Target: 5'- cCACGcGCUggaggCCGCCGggcugcgcaCCACGGCGg -3' miRNA: 3'- -GUGCaUGAaca--GGCGGCa--------GGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 105214 | 0.67 | 0.913792 |
Target: 5'- gACGgcGCUg--CC-CCGUCCGCAGCGc -3' miRNA: 3'- gUGCa-UGAacaGGcGGCAGGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 133098 | 0.67 | 0.913199 |
Target: 5'- cCugGUGCUgcuggaggccUGUCUucgcguccccaugGCCGcCCAUAGCAg -3' miRNA: 3'- -GugCAUGA----------ACAGG-------------CGGCaGGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 23231 | 0.67 | 0.907753 |
Target: 5'- cCGCGgaccggagACgacGUCCGCgGUCCGCGGg- -3' miRNA: 3'- -GUGCa-------UGaa-CAGGCGgCAGGUGUCgu -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 115876 | 0.67 | 0.907753 |
Target: 5'- gGCGccgGCUaccauagCCGCCGUCCGCGGg- -3' miRNA: 3'- gUGCa--UGAaca----GGCGGCAGGUGUCgu -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 24438 | 0.67 | 0.901475 |
Target: 5'- aGCGcGCggUGcCCGCCGgCUACGGCGc -3' miRNA: 3'- gUGCaUGa-ACaGGCGGCaGGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 87514 | 0.67 | 0.89363 |
Target: 5'- cCGCGUGCcccggcuaccgGUUCGCCGcCCACguguGGCAg -3' miRNA: 3'- -GUGCAUGaa---------CAGGCGGCaGGUG----UCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 15563 | 0.68 | 0.881239 |
Target: 5'- gGCGU---UG-CCGCCG-CCGCGGCGg -3' miRNA: 3'- gUGCAugaACaGGCGGCaGGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 8687 | 0.68 | 0.874038 |
Target: 5'- cCGCGUGCg---CCGCCGUCgGC-GCc -3' miRNA: 3'- -GUGCAUGaacaGGCGGCAGgUGuCGu -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 1596 | 0.68 | 0.874038 |
Target: 5'- gCGCGUGCgcacgcgGUaCCGCaCGUuggccCCGCGGCAg -3' miRNA: 3'- -GUGCAUGaa-----CA-GGCG-GCA-----GGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 139389 | 0.68 | 0.858986 |
Target: 5'- gACGUccggGCaccagGUCCGCCc-CCACAGCAg -3' miRNA: 3'- gUGCA----UGaa---CAGGCGGcaGGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 137846 | 0.68 | 0.851144 |
Target: 5'- cCACGUACgUGU-CGUCGUCCAUGGa- -3' miRNA: 3'- -GUGCAUGaACAgGCGGCAGGUGUCgu -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 47012 | 0.69 | 0.809064 |
Target: 5'- gGCGUGCccgGggagCCGCCGaaCGCGGCAg -3' miRNA: 3'- gUGCAUGaa-Ca---GGCGGCagGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 87292 | 0.7 | 0.772428 |
Target: 5'- -uCGUGCUgg-CCGaCCG-CCACAGCAc -3' miRNA: 3'- guGCAUGAacaGGC-GGCaGGUGUCGU- -5' |
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5452 | 5' | -54.9 | NC_001798.1 | + | 150658 | 0.71 | 0.72385 |
Target: 5'- gGCGUcCUgcccUCCGCCG-CCGCGGCGu -3' miRNA: 3'- gUGCAuGAac--AGGCGGCaGGUGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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