miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5452 5' -54.9 NC_001798.1 + 1255 0.66 0.944955
Target:  5'- gGCGgGCccgcGUCCGCguCGUCgCGCAGCAc -3'
miRNA:   3'- gUGCaUGaa--CAGGCG--GCAG-GUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 77645 0.66 0.944507
Target:  5'- gACGaACUUGaggCCGCCGUCgCcgaccugACGGCGa -3'
miRNA:   3'- gUGCaUGAACa--GGCGGCAG-G-------UGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 131081 0.66 0.940365
Target:  5'- gGCGUACacggCCGCCG-CCagcaACAGCGu -3'
miRNA:   3'- gUGCAUGaacaGGCGGCaGG----UGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 83831 0.66 0.935534
Target:  5'- gCACGgacggGCcgGUCC-CCGUCCggGCGGCGc -3'
miRNA:   3'- -GUGCa----UGaaCAGGcGGCAGG--UGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 70545 0.67 0.919591
Target:  5'- cCACGcGCUggaggCCGCCGggcugcgcaCCACGGCGg -3'
miRNA:   3'- -GUGCaUGAaca--GGCGGCa--------GGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 72594 0.67 0.919591
Target:  5'- uCGCGggGCUgcgGUCCGUCGUCaccgagacgACGGCGc -3'
miRNA:   3'- -GUGCa-UGAa--CAGGCGGCAGg--------UGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 105214 0.67 0.913792
Target:  5'- gACGgcGCUg--CC-CCGUCCGCAGCGc -3'
miRNA:   3'- gUGCa-UGAacaGGcGGCAGGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 133098 0.67 0.913199
Target:  5'- cCugGUGCUgcuggaggccUGUCUucgcguccccaugGCCGcCCAUAGCAg -3'
miRNA:   3'- -GugCAUGA----------ACAGG-------------CGGCaGGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 23231 0.67 0.907753
Target:  5'- cCGCGgaccggagACgacGUCCGCgGUCCGCGGg- -3'
miRNA:   3'- -GUGCa-------UGaa-CAGGCGgCAGGUGUCgu -5'
5452 5' -54.9 NC_001798.1 + 115876 0.67 0.907753
Target:  5'- gGCGccgGCUaccauagCCGCCGUCCGCGGg- -3'
miRNA:   3'- gUGCa--UGAaca----GGCGGCAGGUGUCgu -5'
5452 5' -54.9 NC_001798.1 + 24438 0.67 0.901475
Target:  5'- aGCGcGCggUGcCCGCCGgCUACGGCGc -3'
miRNA:   3'- gUGCaUGa-ACaGGCGGCaGGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 87514 0.67 0.89363
Target:  5'- cCGCGUGCcccggcuaccgGUUCGCCGcCCACguguGGCAg -3'
miRNA:   3'- -GUGCAUGaa---------CAGGCGGCaGGUG----UCGU- -5'
5452 5' -54.9 NC_001798.1 + 15563 0.68 0.881239
Target:  5'- gGCGU---UG-CCGCCG-CCGCGGCGg -3'
miRNA:   3'- gUGCAugaACaGGCGGCaGGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 8687 0.68 0.874038
Target:  5'- cCGCGUGCg---CCGCCGUCgGC-GCc -3'
miRNA:   3'- -GUGCAUGaacaGGCGGCAGgUGuCGu -5'
5452 5' -54.9 NC_001798.1 + 1596 0.68 0.874038
Target:  5'- gCGCGUGCgcacgcgGUaCCGCaCGUuggccCCGCGGCAg -3'
miRNA:   3'- -GUGCAUGaa-----CA-GGCG-GCA-----GGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 139389 0.68 0.858986
Target:  5'- gACGUccggGCaccagGUCCGCCc-CCACAGCAg -3'
miRNA:   3'- gUGCA----UGaa---CAGGCGGcaGGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 137846 0.68 0.851144
Target:  5'- cCACGUACgUGU-CGUCGUCCAUGGa- -3'
miRNA:   3'- -GUGCAUGaACAgGCGGCAGGUGUCgu -5'
5452 5' -54.9 NC_001798.1 + 47012 0.69 0.809064
Target:  5'- gGCGUGCccgGggagCCGCCGaaCGCGGCAg -3'
miRNA:   3'- gUGCAUGaa-Ca---GGCGGCagGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 87292 0.7 0.772428
Target:  5'- -uCGUGCUgg-CCGaCCG-CCACAGCAc -3'
miRNA:   3'- guGCAUGAacaGGC-GGCaGGUGUCGU- -5'
5452 5' -54.9 NC_001798.1 + 150658 0.71 0.72385
Target:  5'- gGCGUcCUgcccUCCGCCG-CCGCGGCGu -3'
miRNA:   3'- gUGCAuGAac--AGGCGGCaGGUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.