miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5453 3' -60 NC_001798.1 + 97771 0.66 0.799825
Target:  5'- aCGGCGagguGCUgCCcgcgACCuUCGCCGcGGUGCCa -3'
miRNA:   3'- gGCUGU----CGA-GG----UGG-AGCGGC-UCGCGG- -5'
5453 3' -60 NC_001798.1 + 147155 0.66 0.799825
Target:  5'- gCCGGgGGUcccggguagCCGCCcggCGCCGGGCGg- -3'
miRNA:   3'- -GGCUgUCGa--------GGUGGa--GCGGCUCGCgg -5'
5453 3' -60 NC_001798.1 + 21633 0.66 0.799825
Target:  5'- uCCGGguGCgucggugCCcCgCUCGCCGccGGCGUCu -3'
miRNA:   3'- -GGCUguCGa------GGuG-GAGCGGC--UCGCGG- -5'
5453 3' -60 NC_001798.1 + 24020 0.66 0.799825
Target:  5'- gCGAUgggguGGCUCCagaACC-CGCgCGuGGCGCCc -3'
miRNA:   3'- gGCUG-----UCGAGG---UGGaGCG-GC-UCGCGG- -5'
5453 3' -60 NC_001798.1 + 82077 0.66 0.799825
Target:  5'- gCGGcCGGC-CCACCccggCGCCucacGCGCCc -3'
miRNA:   3'- gGCU-GUCGaGGUGGa---GCGGcu--CGCGG- -5'
5453 3' -60 NC_001798.1 + 98315 0.66 0.799825
Target:  5'- uCCGAaGGUcuguaccgCUACC-CGCCGGGCGUg -3'
miRNA:   3'- -GGCUgUCGa-------GGUGGaGCGGCUCGCGg -5'
5453 3' -60 NC_001798.1 + 102360 0.66 0.799825
Target:  5'- uCCGGCGGCcgccggaagcCCACC-CGCCuGGCGgUCg -3'
miRNA:   3'- -GGCUGUCGa---------GGUGGaGCGGcUCGC-GG- -5'
5453 3' -60 NC_001798.1 + 23479 0.66 0.799825
Target:  5'- aCGACGaCgCCGCCcgCGCCcccgccAGCGCCg -3'
miRNA:   3'- gGCUGUcGaGGUGGa-GCGGc-----UCGCGG- -5'
5453 3' -60 NC_001798.1 + 151131 0.66 0.798964
Target:  5'- aCCGuCGGCcaggucaUCguCCUCGUCGuccGUGCCg -3'
miRNA:   3'- -GGCuGUCG-------AGguGGAGCGGCu--CGCGG- -5'
5453 3' -60 NC_001798.1 + 32858 0.66 0.794638
Target:  5'- cCCGAaggaAGCcgccccccaccggaCCACCg-GCCGAGgCGCCu -3'
miRNA:   3'- -GGCUg---UCGa-------------GGUGGagCGGCUC-GCGG- -5'
5453 3' -60 NC_001798.1 + 22305 0.66 0.792899
Target:  5'- gCGGCGGCgcgaccaacgggCCGCCgccacggacgcggaCGCgCGGGCGUCg -3'
miRNA:   3'- gGCUGUCGa-----------GGUGGa-------------GCG-GCUCGCGG- -5'
5453 3' -60 NC_001798.1 + 22112 0.66 0.791154
Target:  5'- aCCaACGGggCgACCUCGCCGgccccuuuGGgGCCg -3'
miRNA:   3'- -GGcUGUCgaGgUGGAGCGGC--------UCgCGG- -5'
5453 3' -60 NC_001798.1 + 17276 0.66 0.791154
Target:  5'- aCGGCGGuCUCaaagauCACCagGCCG-GCGCUc -3'
miRNA:   3'- gGCUGUC-GAG------GUGGagCGGCuCGCGG- -5'
5453 3' -60 NC_001798.1 + 1165 0.66 0.791154
Target:  5'- gCGGCGGUccccaCCACCUCcacgccGCCGccCGCCg -3'
miRNA:   3'- gGCUGUCGa----GGUGGAG------CGGCucGCGG- -5'
5453 3' -60 NC_001798.1 + 24573 0.66 0.790279
Target:  5'- gCCGGCgcgcggaGGCgggCCGCgUgGCCgugGAGUGCCu -3'
miRNA:   3'- -GGCUG-------UCGa--GGUGgAgCGG---CUCGCGG- -5'
5453 3' -60 NC_001798.1 + 20735 0.66 0.790279
Target:  5'- gCCGACAGaUCCaaaaaauACCUCcccCCGAGCuCCc -3'
miRNA:   3'- -GGCUGUCgAGG-------UGGAGc--GGCUCGcGG- -5'
5453 3' -60 NC_001798.1 + 2935 0.66 0.782351
Target:  5'- aCCG-CAGCUCgCGCa--GCCaGGCGCg -3'
miRNA:   3'- -GGCuGUCGAG-GUGgagCGGcUCGCGg -5'
5453 3' -60 NC_001798.1 + 85716 0.66 0.782351
Target:  5'- gCCGAC-GC----CCUCcCCGGGCGCCg -3'
miRNA:   3'- -GGCUGuCGagguGGAGcGGCUCGCGG- -5'
5453 3' -60 NC_001798.1 + 96663 0.66 0.782351
Target:  5'- cCCGAgCGGCgCCACggccgCGCUGgAGCGCg -3'
miRNA:   3'- -GGCU-GUCGaGGUGga---GCGGC-UCGCGg -5'
5453 3' -60 NC_001798.1 + 2066 0.66 0.782351
Target:  5'- -gGACAGC-CCGCCgCGCUcGGCGgaCCa -3'
miRNA:   3'- ggCUGUCGaGGUGGaGCGGcUCGC--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.