miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5453 5' -53.9 NC_001798.1 + 102200 0.66 0.977548
Target:  5'- cCUGGCGCGcGGcgcGCCGGG---AGUCGa -3'
miRNA:   3'- -GGCUGCGCaUCa--CGGCCUacaUCAGC- -5'
5453 5' -53.9 NC_001798.1 + 33900 0.66 0.972455
Target:  5'- aCGACGCGUuuUGCgGGGcaUGcaAGUCGa -3'
miRNA:   3'- gGCUGCGCAucACGgCCU--ACa-UCAGC- -5'
5453 5' -53.9 NC_001798.1 + 67261 0.66 0.969618
Target:  5'- cCCgGACGUcUGGguccccaCGGAUGUAGUCGc -3'
miRNA:   3'- -GG-CUGCGcAUCacg----GCCUACAUCAGC- -5'
5453 5' -53.9 NC_001798.1 + 144691 0.66 0.963328
Target:  5'- cCCGACGCagcggcgAGUGCUGa--GUAGUCa -3'
miRNA:   3'- -GGCUGCGca-----UCACGGCcuaCAUCAGc -5'
5453 5' -53.9 NC_001798.1 + 132341 0.67 0.959865
Target:  5'- cCCGGCGaCGUgaccacauGGgGCCGGuaccggGUGGUCa -3'
miRNA:   3'- -GGCUGC-GCA--------UCaCGGCCua----CAUCAGc -5'
5453 5' -53.9 NC_001798.1 + 29894 0.67 0.956182
Target:  5'- cCCGGCuGCGg---GuuGGggGUGGUCGc -3'
miRNA:   3'- -GGCUG-CGCaucaCggCCuaCAUCAGC- -5'
5453 5' -53.9 NC_001798.1 + 64123 0.67 0.952277
Target:  5'- cCCGACGCGUGG-GUaucuaGGG---GGUCGg -3'
miRNA:   3'- -GGCUGCGCAUCaCGg----CCUacaUCAGC- -5'
5453 5' -53.9 NC_001798.1 + 65752 0.67 0.943781
Target:  5'- aUGAUGCuggcGGUGCCGGGgcUGgcGUCGu -3'
miRNA:   3'- gGCUGCGca--UCACGGCCU--ACauCAGC- -5'
5453 5' -53.9 NC_001798.1 + 43950 0.68 0.939185
Target:  5'- -gGACGCGgcacugagGGUGUCGGGgcgugGGUCGu -3'
miRNA:   3'- ggCUGCGCa-------UCACGGCCUaca--UCAGC- -5'
5453 5' -53.9 NC_001798.1 + 98569 0.68 0.929288
Target:  5'- -gGGCGC-UGGUgGCCGcGGUGgcGUCGg -3'
miRNA:   3'- ggCUGCGcAUCA-CGGC-CUACauCAGC- -5'
5453 5' -53.9 NC_001798.1 + 16051 0.68 0.923985
Target:  5'- gCGACGCGUGGUaggucGCUGGGggcggcgGgcGUCu -3'
miRNA:   3'- gGCUGCGCAUCA-----CGGCCUa------CauCAGc -5'
5453 5' -53.9 NC_001798.1 + 130303 0.7 0.858267
Target:  5'- gCCGAauggGCGcGGUGCCGGGUGUcG-CGc -3'
miRNA:   3'- -GGCUg---CGCaUCACGGCCUACAuCaGC- -5'
5453 5' -53.9 NC_001798.1 + 153000 0.71 0.82606
Target:  5'- gCCGGCGCGgggcGGUcGCCGGGgcggAGUCc -3'
miRNA:   3'- -GGCUGCGCa---UCA-CGGCCUaca-UCAGc -5'
5453 5' -53.9 NC_001798.1 + 36284 0.71 0.82606
Target:  5'- gCGGCGgGggggGGUGCCguGGGUGUGG-CGg -3'
miRNA:   3'- gGCUGCgCa---UCACGG--CCUACAUCaGC- -5'
5453 5' -53.9 NC_001798.1 + 120773 0.74 0.663637
Target:  5'- gCCGugGCGuUGGUGUgcgucaccacccgCGGcAUGUGGUCGu -3'
miRNA:   3'- -GGCugCGC-AUCACG-------------GCC-UACAUCAGC- -5'
5453 5' -53.9 NC_001798.1 + 149393 0.74 0.644329
Target:  5'- uCCGACGCGgggGGcGUCGG--GUAGUCGg -3'
miRNA:   3'- -GGCUGCGCa--UCaCGGCCuaCAUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.