miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5454 3' -62.9 NC_001798.1 + 55109 0.66 0.649255
Target:  5'- gGCGGGCcacacGCG-CCC-CGGACCCgggacuaagccugucGCCCa -3'
miRNA:   3'- -CGUCCG-----CGCaGGGcGUCUGGG---------------UGGGc -5'
5454 3' -62.9 NC_001798.1 + 121947 0.66 0.645378
Target:  5'- uGCAGGaCGUcaCCCGCcg--CCACCCGg -3'
miRNA:   3'- -CGUCC-GCGcaGGGCGucugGGUGGGC- -5'
5454 3' -62.9 NC_001798.1 + 27543 0.66 0.645378
Target:  5'- cGCGGcGCGCGgggggaggggcggcgCCCGCGGgggagcgGCCgGCuCCGg -3'
miRNA:   3'- -CGUC-CGCGCa--------------GGGCGUC-------UGGgUG-GGC- -5'
5454 3' -62.9 NC_001798.1 + 47292 0.66 0.645378
Target:  5'- -gGGGCGUGUCuguCCGUu-GCCCcCCCGg -3'
miRNA:   3'- cgUCCGCGCAG---GGCGucUGGGuGGGC- -5'
5454 3' -62.9 NC_001798.1 + 74256 0.66 0.645378
Target:  5'- cGCAcGGCcUG-CCCGCGGGaaCGCCCGc -3'
miRNA:   3'- -CGU-CCGcGCaGGGCGUCUggGUGGGC- -5'
5454 3' -62.9 NC_001798.1 + 113504 0.66 0.645378
Target:  5'- cGCGGcccuGUGCGcCCUGguGGCggCCGCCCa -3'
miRNA:   3'- -CGUC----CGCGCaGGGCguCUG--GGUGGGc -5'
5454 3' -62.9 NC_001798.1 + 76702 0.66 0.645378
Target:  5'- cGgAGGCGCGcUCCCGgCuucgGGAgCgCGCCCa -3'
miRNA:   3'- -CgUCCGCGC-AGGGC-G----UCUgG-GUGGGc -5'
5454 3' -62.9 NC_001798.1 + 86098 0.66 0.645378
Target:  5'- gGCu-GCGCGcCgCCGCGGacGCCCGCCgCGc -3'
miRNA:   3'- -CGucCGCGCaG-GGCGUC--UGGGUGG-GC- -5'
5454 3' -62.9 NC_001798.1 + 1200 0.66 0.642469
Target:  5'- cGCGGccagcaccguccccGCGCGgCCCGCGG-CCgaCGCCCa -3'
miRNA:   3'- -CGUC--------------CGCGCaGGGCGUCuGG--GUGGGc -5'
5454 3' -62.9 NC_001798.1 + 121456 0.66 0.642469
Target:  5'- uGCc-GCGCGUCCCcagcGCGGGcgggcuguucgucuCCCugCCGg -3'
miRNA:   3'- -CGucCGCGCAGGG----CGUCU--------------GGGugGGC- -5'
5454 3' -62.9 NC_001798.1 + 122064 0.66 0.639558
Target:  5'- -uGGGCGCGUCggaCGCggaggcggugcuggcGGGCCUggagccGCCCGg -3'
miRNA:   3'- cgUCCGCGCAGg--GCG---------------UCUGGG------UGGGC- -5'
5454 3' -62.9 NC_001798.1 + 124128 0.66 0.635678
Target:  5'- cGCuguGGCGCGccCCCGCcguggcggAGGCCUGuCCCu -3'
miRNA:   3'- -CGu--CCGCGCa-GGGCG--------UCUGGGU-GGGc -5'
5454 3' -62.9 NC_001798.1 + 93256 0.66 0.635678
Target:  5'- cCAGGaaaCG-CCCGCGG-CCCGCgCCGg -3'
miRNA:   3'- cGUCCgc-GCaGGGCGUCuGGGUG-GGC- -5'
5454 3' -62.9 NC_001798.1 + 42342 0.66 0.635678
Target:  5'- cGCAGGCuGUGg-CCGUGGGCguacaCGCCCGu -3'
miRNA:   3'- -CGUCCG-CGCagGGCGUCUGg----GUGGGC- -5'
5454 3' -62.9 NC_001798.1 + 12279 0.66 0.635678
Target:  5'- cGguGGCGCaGaCCCaCAGGCCCaggaucgccagGCCCu -3'
miRNA:   3'- -CguCCGCG-CaGGGcGUCUGGG-----------UGGGc -5'
5454 3' -62.9 NC_001798.1 + 127348 0.66 0.635678
Target:  5'- aGCcuGgGCGUCCC-CGuGACCCGcguCCCGg -3'
miRNA:   3'- -CGucCgCGCAGGGcGU-CUGGGU---GGGC- -5'
5454 3' -62.9 NC_001798.1 + 35539 0.66 0.625976
Target:  5'- gGCcGGCGCGgggCgUUGCcGGCCCgGCCCGg -3'
miRNA:   3'- -CGuCCGCGCa--G-GGCGuCUGGG-UGGGC- -5'
5454 3' -62.9 NC_001798.1 + 50136 0.66 0.625976
Target:  5'- cGCGGGacaaCGCc-CCCGCAGACuguccaccaCCGCCCc -3'
miRNA:   3'- -CGUCC----GCGcaGGGCGUCUG---------GGUGGGc -5'
5454 3' -62.9 NC_001798.1 + 86906 0.66 0.625976
Target:  5'- --cGGCGUGgagcgccgggccUCCCGCaAGAgCCugCCGu -3'
miRNA:   3'- cguCCGCGC------------AGGGCG-UCUgGGugGGC- -5'
5454 3' -62.9 NC_001798.1 + 7689 0.66 0.625976
Target:  5'- gGCccuGGCGCa-CCUGCAGAUgCUGCCCGc -3'
miRNA:   3'- -CGu--CCGCGcaGGGCGUCUG-GGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.