miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5454 5' -52.1 NC_001798.1 + 69675 0.66 0.990634
Target:  5'- gGgAgGAgGGCGgaaaggaaaaacacgCCACCAGAAAACa -3'
miRNA:   3'- gCgUgCUaCCGCa--------------GGUGGUCUUUUGg -5'
5454 5' -52.1 NC_001798.1 + 125714 0.66 0.990509
Target:  5'- gCGCGCGcgGGgG-CgGCgAGAuGAGCCg -3'
miRNA:   3'- -GCGUGCuaCCgCaGgUGgUCU-UUUGG- -5'
5454 5' -52.1 NC_001798.1 + 116534 0.66 0.990509
Target:  5'- uGCAcCGcgGGgGUCCGCUuc--GACCg -3'
miRNA:   3'- gCGU-GCuaCCgCAGGUGGucuuUUGG- -5'
5454 5' -52.1 NC_001798.1 + 116464 0.66 0.990509
Target:  5'- gGC-CGAcUGGacCGUCCACCAcAAAAUCu -3'
miRNA:   3'- gCGuGCU-ACC--GCAGGUGGUcUUUUGG- -5'
5454 5' -52.1 NC_001798.1 + 99238 0.66 0.990509
Target:  5'- gCGCACGAgccgggGGUGgcaCACCAcc-GACCu -3'
miRNA:   3'- -GCGUGCUa-----CCGCag-GUGGUcuuUUGG- -5'
5454 5' -52.1 NC_001798.1 + 56776 0.66 0.990509
Target:  5'- uGCGCGGggGGCccuggCCGCC-GAcgGCCg -3'
miRNA:   3'- gCGUGCUa-CCGca---GGUGGuCUuuUGG- -5'
5454 5' -52.1 NC_001798.1 + 1726 0.66 0.990384
Target:  5'- aGCACGGUGcggcgcaggucccGCG-CCGCCGGccAGCg -3'
miRNA:   3'- gCGUGCUAC-------------CGCaGGUGGUCuuUUGg -5'
5454 5' -52.1 NC_001798.1 + 44880 0.66 0.989192
Target:  5'- gCGCGCguguuccggGAUGGCGUCCcuGCuCGGGu-GCUg -3'
miRNA:   3'- -GCGUG---------CUACCGCAGG--UG-GUCUuuUGG- -5'
5454 5' -52.1 NC_001798.1 + 60627 0.66 0.989192
Target:  5'- aCGcCGCGGUGG-GUCCGCCccaucGAuAGCg -3'
miRNA:   3'- -GC-GUGCUACCgCAGGUGGu----CUuUUGg -5'
5454 5' -52.1 NC_001798.1 + 149290 0.66 0.989192
Target:  5'- -cCACgGGUGGCG-CgACCGG-AGGCCg -3'
miRNA:   3'- gcGUG-CUACCGCaGgUGGUCuUUUGG- -5'
5454 5' -52.1 NC_001798.1 + 151630 0.66 0.989192
Target:  5'- gGCGUGGccGCGUCCAUCAGGcccGCCu -3'
miRNA:   3'- gCGUGCUacCGCAGGUGGUCUuu-UGG- -5'
5454 5' -52.1 NC_001798.1 + 37452 0.66 0.989053
Target:  5'- gCGCACG-UGGCGaCCcCCGcuugucaauucgcGAGAGCUg -3'
miRNA:   3'- -GCGUGCuACCGCaGGuGGU-------------CUUUUGG- -5'
5454 5' -52.1 NC_001798.1 + 144809 0.66 0.988336
Target:  5'- gGCGCGucguuguuuccugGGUGUCgGCCGGAAAcACa -3'
miRNA:   3'- gCGUGCua-----------CCGCAGgUGGUCUUU-UGg -5'
5454 5' -52.1 NC_001798.1 + 109564 0.66 0.987737
Target:  5'- gGCGCGGUGGCcccgagcgcgGcCCGCCuGAucgacGCCc -3'
miRNA:   3'- gCGUGCUACCG----------CaGGUGGuCUuu---UGG- -5'
5454 5' -52.1 NC_001798.1 + 149453 0.66 0.987737
Target:  5'- aGCAgGGUgcGGCGgcUCCACgCGGggG-CCg -3'
miRNA:   3'- gCGUgCUA--CCGC--AGGUG-GUCuuUuGG- -5'
5454 5' -52.1 NC_001798.1 + 25753 0.66 0.987737
Target:  5'- gGCGCGcagGGCGugcugcugcugUCCACgCGGGAccuGGCCu -3'
miRNA:   3'- gCGUGCua-CCGC-----------AGGUG-GUCUU---UUGG- -5'
5454 5' -52.1 NC_001798.1 + 111640 0.66 0.987737
Target:  5'- uCGCGuCGggGGCGcUCgGCgGGggGGCg -3'
miRNA:   3'- -GCGU-GCuaCCGC-AGgUGgUCuuUUGg -5'
5454 5' -52.1 NC_001798.1 + 62463 0.66 0.987737
Target:  5'- cCGCGCGAcGGCGcCCGgucguccuccUCGGAGAuacucACCc -3'
miRNA:   3'- -GCGUGCUaCCGCaGGU----------GGUCUUU-----UGG- -5'
5454 5' -52.1 NC_001798.1 + 24439 0.66 0.987584
Target:  5'- gCGCGCGGUgcccgccggcuacGGCG-CCGCgGGGGugcucGCCg -3'
miRNA:   3'- -GCGUGCUA-------------CCGCaGGUGgUCUUu----UGG- -5'
5454 5' -52.1 NC_001798.1 + 134254 0.66 0.987584
Target:  5'- gCGUGCGuucUGGCGgCCcuggagcGCCAGAcGGGCCg -3'
miRNA:   3'- -GCGUGCu--ACCGCaGG-------UGGUCU-UUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.