miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5455 3' -54.9 NC_001798.1 + 151604 0.66 0.94638
Target:  5'- -gGCGCUCggccGgGGGC-CGGGccgGGGGCg -3'
miRNA:   3'- ugCGCGAGa---UgCCUGuGCCCa--UCUUG- -5'
5455 3' -54.9 NC_001798.1 + 14344 0.66 0.94638
Target:  5'- uCGCGUUUguuguauCGGACGCGGGgccggugGGuGCg -3'
miRNA:   3'- uGCGCGAGau-----GCCUGUGCCCa------UCuUG- -5'
5455 3' -54.9 NC_001798.1 + 108969 0.66 0.94638
Target:  5'- -gGUGC-CUGCGGACAagacccucgcuCGGGUcGGAAa -3'
miRNA:   3'- ugCGCGaGAUGCCUGU-----------GCCCA-UCUUg -5'
5455 3' -54.9 NC_001798.1 + 56072 0.66 0.94638
Target:  5'- -gGCGCUCUcuucCGGAgGCGuuUGGAGCc -3'
miRNA:   3'- ugCGCGAGAu---GCCUgUGCccAUCUUG- -5'
5455 3' -54.9 NC_001798.1 + 91615 0.66 0.941873
Target:  5'- cCGCGCUU-AUGGGCGgccggccgccCGGGU-GAGCg -3'
miRNA:   3'- uGCGCGAGaUGCCUGU----------GCCCAuCUUG- -5'
5455 3' -54.9 NC_001798.1 + 22336 0.66 0.941873
Target:  5'- gACGCGgaCgcGCGGGCGuCGGGgcGGGGCc -3'
miRNA:   3'- -UGCGCgaGa-UGCCUGU-GCCCa-UCUUG- -5'
5455 3' -54.9 NC_001798.1 + 4104 0.66 0.937127
Target:  5'- gGCGgGCUCggcccuggGCGGGCuCGGccGGGGCg -3'
miRNA:   3'- -UGCgCGAGa-------UGCCUGuGCCcaUCUUG- -5'
5455 3' -54.9 NC_001798.1 + 26816 0.66 0.937127
Target:  5'- gGCGgGCgggggUCggGCGGGCGgGGGUcGGGCg -3'
miRNA:   3'- -UGCgCG-----AGa-UGCCUGUgCCCAuCUUG- -5'
5455 3' -54.9 NC_001798.1 + 26861 0.66 0.937127
Target:  5'- gGCGgGCgggggUCggGCGGGCGgGGGUcGGGCg -3'
miRNA:   3'- -UGCgCG-----AGa-UGCCUGUgCCCAuCUUG- -5'
5455 3' -54.9 NC_001798.1 + 26906 0.66 0.937127
Target:  5'- gGCGgGCgggggUCggGCGGGCGgGGGUcGGGCg -3'
miRNA:   3'- -UGCgCG-----AGa-UGCCUGUgCCCAuCUUG- -5'
5455 3' -54.9 NC_001798.1 + 26980 0.66 0.937127
Target:  5'- gGCGgGCgggggUCggGCGGGCGgGGGUcGGGCg -3'
miRNA:   3'- -UGCgCG-----AGa-UGCCUGUgCCCAuCUUG- -5'
5455 3' -54.9 NC_001798.1 + 27546 0.66 0.936149
Target:  5'- gGCGCGCggggggagggGCGGcgccCGCGGG-GGAGCg -3'
miRNA:   3'- -UGCGCGaga-------UGCCu---GUGCCCaUCUUG- -5'
5455 3' -54.9 NC_001798.1 + 145800 0.66 0.932141
Target:  5'- aGCGCGCgggCggcagaaacGCGGGCGCggcggcggucgGGGUGGGAg -3'
miRNA:   3'- -UGCGCGa--Ga--------UGCCUGUG-----------CCCAUCUUg -5'
5455 3' -54.9 NC_001798.1 + 58976 0.66 0.932141
Target:  5'- cACGCGUcg-GCGGccgggcgaACGCGGGgGGGGCg -3'
miRNA:   3'- -UGCGCGagaUGCC--------UGUGCCCaUCUUG- -5'
5455 3' -54.9 NC_001798.1 + 11625 0.66 0.932141
Target:  5'- uCGcCGCUC-GCGGGCGCGGGc----- -3'
miRNA:   3'- uGC-GCGAGaUGCCUGUGCCCaucuug -5'
5455 3' -54.9 NC_001798.1 + 121392 0.66 0.926913
Target:  5'- uACGUGC-CgGCGGAUGCGGugGGGGCg -3'
miRNA:   3'- -UGCGCGaGaUGCCUGUGCCcaUCUUG- -5'
5455 3' -54.9 NC_001798.1 + 34591 0.66 0.926913
Target:  5'- gGCGCGgcguCUCggugGGACGCGGGcaaAGGGCg -3'
miRNA:   3'- -UGCGC----GAGaug-CCUGUGCCCa--UCUUG- -5'
5455 3' -54.9 NC_001798.1 + 117677 0.66 0.926913
Target:  5'- gACGCGCggccgGCGGcguguACGCGGGggacaaggaggGGGACg -3'
miRNA:   3'- -UGCGCGaga--UGCC-----UGUGCCCa----------UCUUG- -5'
5455 3' -54.9 NC_001798.1 + 2284 0.66 0.926913
Target:  5'- aGCGCGCggccagCgaggccaGCGcGCGCGGGUcGAACa -3'
miRNA:   3'- -UGCGCGa-----Ga------UGCcUGUGCCCAuCUUG- -5'
5455 3' -54.9 NC_001798.1 + 24438 0.66 0.924208
Target:  5'- aGCGCGCggugcccgccggCUACGGcgcCGCGGGggugcucgccgcccUGGGGCg -3'
miRNA:   3'- -UGCGCGa-----------GAUGCCu--GUGCCC--------------AUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.