miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5455 5' -64.7 NC_001798.1 + 111101 0.66 0.497312
Target:  5'- ---cCCCGGGGUCAGGcGuuGcgaguccacaaAGCGCAg -3'
miRNA:   3'- uacaGGGUCCCGGUCC-CggC-----------UCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 39888 0.66 0.497312
Target:  5'- -cGUCCuCGGGGC--GGGCCGGGgGa- -3'
miRNA:   3'- uaCAGG-GUCCCGguCCCGGCUCgCgu -5'
5455 5' -64.7 NC_001798.1 + 7790 0.66 0.495468
Target:  5'- -cGcCCCcgcuggcGGGaGCCAGGGUCGgacaggaGGCGCAg -3'
miRNA:   3'- uaCaGGG-------UCC-CGGUCCCGGC-------UCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 147210 0.66 0.488121
Target:  5'- -gGUCCgGcccGGGCCcccGGCgGAGCGCGg -3'
miRNA:   3'- uaCAGGgU---CCCGGuc-CCGgCUCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 31784 0.66 0.488121
Target:  5'- -cG-CgCGcGGGUCgggAGGGCCGGGCGCGg -3'
miRNA:   3'- uaCaGgGU-CCCGG---UCCCGGCUCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 52872 0.66 0.485379
Target:  5'- -cGUgCUGGGGCCGcGGGuCCGcgcguggacaucauGGCGCAg -3'
miRNA:   3'- uaCAgGGUCCCGGU-CCC-GGC--------------UCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 134160 0.66 0.47901
Target:  5'- ---cCCCGGGGCCGucGcGGCCGcccGCGCc -3'
miRNA:   3'- uacaGGGUCCCGGU--C-CCGGCu--CGCGu -5'
5455 5' -64.7 NC_001798.1 + 96994 0.66 0.47901
Target:  5'- -----gCGGGGCCAGGGCCGGccCGCc -3'
miRNA:   3'- uacaggGUCCCGGUCCCGGCUc-GCGu -5'
5455 5' -64.7 NC_001798.1 + 72323 0.66 0.469984
Target:  5'- cUGgcggCCCGGGGggugcugCAGGagcucGCCGAGCGCGc -3'
miRNA:   3'- uACa---GGGUCCCg------GUCC-----CGGCUCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 26180 0.66 0.469984
Target:  5'- cGUGcUCCCGGcgcuggacGGCC-GGGCCGccgccucgGGCGCGg -3'
miRNA:   3'- -UAC-AGGGUC--------CCGGuCCCGGC--------UCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 30433 0.66 0.469984
Target:  5'- ---cCCCGGcccGGCCcccGGCCGAGCGCc -3'
miRNA:   3'- uacaGGGUC---CCGGuc-CCGGCUCGCGu -5'
5455 5' -64.7 NC_001798.1 + 42877 0.66 0.461045
Target:  5'- aGUGaCCCAGGGCCucguGGaGCCGGGg--- -3'
miRNA:   3'- -UACaGGGUCCCGGu---CC-CGGCUCgcgu -5'
5455 5' -64.7 NC_001798.1 + 42170 0.66 0.461045
Target:  5'- --cUCCCgcGGGGCCGcggaaaacauGGGCgGGGCGUg -3'
miRNA:   3'- uacAGGG--UCCCGGU----------CCCGgCUCGCGu -5'
5455 5' -64.7 NC_001798.1 + 150035 0.66 0.461045
Target:  5'- -aGUCCgAGu-CCGGGGCCcGGCGCGg -3'
miRNA:   3'- uaCAGGgUCccGGUCCCGGcUCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 105401 0.66 0.461045
Target:  5'- -cGUucUCCAGGGCCGccGcGGCCGcGGUGCGc -3'
miRNA:   3'- uaCA--GGGUCCCGGU--C-CCGGC-UCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 70573 0.67 0.443443
Target:  5'- ---aCCaCGGcGGCCcuGGGGCCGGuGCGCGu -3'
miRNA:   3'- uacaGG-GUC-CCGG--UCCCGGCU-CGCGU- -5'
5455 5' -64.7 NC_001798.1 + 84601 0.67 0.443443
Target:  5'- -gGUCCCGGuGCCGGugccccGCCGaAGCGCGc -3'
miRNA:   3'- uaCAGGGUCcCGGUCc-----CGGC-UCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 85253 0.67 0.434784
Target:  5'- ---cCCCGcGGCCgcgcGGGGCCGcGCGCGa -3'
miRNA:   3'- uacaGGGUcCCGG----UCCCGGCuCGCGU- -5'
5455 5' -64.7 NC_001798.1 + 148084 0.67 0.434784
Target:  5'- -cGggCCgGGGGCCGGGGCCGcuagggaaaGGUagGCAc -3'
miRNA:   3'- uaCa-GGgUCCCGGUCCCGGC---------UCG--CGU- -5'
5455 5' -64.7 NC_001798.1 + 139420 0.67 0.434784
Target:  5'- -aG-CCCGGGGCCAGacccGCCGuGCGg- -3'
miRNA:   3'- uaCaGGGUCCCGGUCc---CGGCuCGCgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.