Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5455 | 5' | -64.7 | NC_001798.1 | + | 79109 | 0.77 | 0.093316 |
Target: 5'- -cGUCCUGGGcGCCaaGGGcGCCGAGCGCGc -3' miRNA: 3'- uaCAGGGUCC-CGG--UCC-CGGCUCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 24889 | 0.75 | 0.126244 |
Target: 5'- -gGUCgCCGGGGCCcuGGGCCcGGCGCu -3' miRNA: 3'- uaCAG-GGUCCCGGu-CCCGGcUCGCGu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 104581 | 0.75 | 0.137377 |
Target: 5'- gGUGUCUCGGGGaacgucgcCCGGGGCCGccgguagcaccccguGGCGCAc -3' miRNA: 3'- -UACAGGGUCCC--------GGUCCCGGC---------------UCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 79363 | 0.73 | 0.178082 |
Target: 5'- -cGUacgCCAGGGCCGGcGGCCagacGGGCGCGg -3' miRNA: 3'- uaCAg--GGUCCCGGUC-CCGG----CUCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 146485 | 0.73 | 0.186876 |
Target: 5'- ---cUCCGGGGCC-GGGCCGGGCcgGCAa -3' miRNA: 3'- uacaGGGUCCCGGuCCCGGCUCG--CGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 84730 | 0.72 | 0.200782 |
Target: 5'- gGUGUCCUgcguauguGGGGCggCGGGGCCGucgGGCGCu -3' miRNA: 3'- -UACAGGG--------UCCCG--GUCCCGGC---UCGCGu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 11651 | 0.72 | 0.210546 |
Target: 5'- uGUGUCCCcgGGGGCgGGGGUCGGGUc-- -3' miRNA: 3'- -UACAGGG--UCCCGgUCCCGGCUCGcgu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 79932 | 0.72 | 0.21558 |
Target: 5'- gGUGUCgCuGGGCCcagcuGGGCUGGGCGUc -3' miRNA: 3'- -UACAGgGuCCCGGu----CCCGGCUCGCGu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 151610 | 0.72 | 0.21558 |
Target: 5'- -cGgCCgGGGGCC-GGGCCGGGgGCGu -3' miRNA: 3'- uaCaGGgUCCCGGuCCCGGCUCgCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 129676 | 0.72 | 0.220716 |
Target: 5'- cGUGgucaCCCGGGcGCCGGGGCCccaguaccGGCGCGc -3' miRNA: 3'- -UACa---GGGUCC-CGGUCCCGGc-------UCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 150081 | 0.72 | 0.220716 |
Target: 5'- ---cCCCuggGGGGCgAGGGgCGAGCGCGg -3' miRNA: 3'- uacaGGG---UCCCGgUCCCgGCUCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 95285 | 0.71 | 0.236754 |
Target: 5'- cUGcCCCAGGGCCGGGuuUGuguGCGCGg -3' miRNA: 3'- uACaGGGUCCCGGUCCcgGCu--CGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 11751 | 0.71 | 0.24798 |
Target: 5'- -gGUCCCAGG-CgCGGGGCCGAaaagggaagcuGCGCc -3' miRNA: 3'- uaCAGGGUCCcG-GUCCCGGCU-----------CGCGu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 34803 | 0.7 | 0.259644 |
Target: 5'- -cGgCCCGGGGCCccGGGGCCcccGCGCu -3' miRNA: 3'- uaCaGGGUCCCGG--UCCCGGcu-CGCGu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 107853 | 0.7 | 0.268072 |
Target: 5'- uGUGUCCauaagcgcggggguuCGGGGCCAGGGCUGGcacCGUAu -3' miRNA: 3'- -UACAGG---------------GUCCCGGUCCCGGCUc--GCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 84941 | 0.7 | 0.277972 |
Target: 5'- --uUUCCAGGGUCuGGGaCCGcAGCGCGc -3' miRNA: 3'- uacAGGGUCCCGGuCCC-GGC-UCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 95319 | 0.7 | 0.290755 |
Target: 5'- -aGUCUCGGGGgCGGGGCCcacGAGCa-- -3' miRNA: 3'- uaCAGGGUCCCgGUCCCGG---CUCGcgu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 135996 | 0.69 | 0.303994 |
Target: 5'- uAUGUCCCGGGGgCGGGGaguCGgucGGCGUc -3' miRNA: 3'- -UACAGGGUCCCgGUCCCg--GC---UCGCGu -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 8083 | 0.69 | 0.303994 |
Target: 5'- -cGUCCCGGGGaCAGGGUgGuuGGUGUAa -3' miRNA: 3'- uaCAGGGUCCCgGUCCCGgC--UCGCGU- -5' |
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5455 | 5' | -64.7 | NC_001798.1 | + | 22733 | 0.69 | 0.303994 |
Target: 5'- -cGaCgCAGGGCCgcGGGGCCGAGguCGCGa -3' miRNA: 3'- uaCaGgGUCCCGG--UCCCGGCUC--GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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