miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5456 3' -52.9 NC_001798.1 + 64491 0.66 0.983477
Target:  5'- cCGUcuUGaaCCGcCGGAGGGGGugGGCGg -3'
miRNA:   3'- cGCA--ACagGGC-GCCUCUCUUugCUGU- -5'
5456 3' -52.9 NC_001798.1 + 106284 0.66 0.983477
Target:  5'- --cUUGUCCCcCGGAGGcgcGAGCGACu -3'
miRNA:   3'- cgcAACAGGGcGCCUCUc--UUUGCUGu -5'
5456 3' -52.9 NC_001798.1 + 43311 0.66 0.983477
Target:  5'- gGCGcUUGacgaUUCCGCaGGucuGGGggGCGGCAg -3'
miRNA:   3'- -CGC-AAC----AGGGCG-CCu--CUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 41443 0.66 0.981488
Target:  5'- gGCGUgggggguccaUGcCCCGCcGGGGGggGCGGuCGg -3'
miRNA:   3'- -CGCA----------ACaGGGCGcCUCUCuuUGCU-GU- -5'
5456 3' -52.9 NC_001798.1 + 2987 0.66 0.981488
Target:  5'- gGCGgccggCCCGCGGgccccgggcgcGGGGgcGCGGCGg -3'
miRNA:   3'- -CGCaaca-GGGCGCC-----------UCUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 42163 0.66 0.981488
Target:  5'- cGCGgaucUCCCGCGGGGccgcGGAaaacAugGGCGg -3'
miRNA:   3'- -CGCaac-AGGGCGCCUC----UCU----UugCUGU- -5'
5456 3' -52.9 NC_001798.1 + 36134 0.66 0.981488
Target:  5'- cGCGa--UCCCGcCGGuGGGgcGCGGCGg -3'
miRNA:   3'- -CGCaacAGGGC-GCCuCUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 2664 0.66 0.979325
Target:  5'- cGCGcc-UCCCGCGGcgcGGAGGcgggcGCGGCGa -3'
miRNA:   3'- -CGCaacAGGGCGCC---UCUCUu----UGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 121730 0.66 0.979325
Target:  5'- gGCGgcccaccUGUCCCuGgGGAuGGGGAaaGCGGCAc -3'
miRNA:   3'- -CGCa------ACAGGG-CgCCU-CUCUU--UGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 22095 0.66 0.979325
Target:  5'- gGCGgaGccgCCCGCGGAccaacGggGCGACc -3'
miRNA:   3'- -CGCaaCa--GGGCGCCUcu---CuuUGCUGu -5'
5456 3' -52.9 NC_001798.1 + 32529 0.66 0.976979
Target:  5'- aCGUgGUCCuCGUGGAccagacGGGGAACGugGc -3'
miRNA:   3'- cGCAaCAGG-GCGCCU------CUCUUUGCugU- -5'
5456 3' -52.9 NC_001798.1 + 39426 0.66 0.976979
Target:  5'- cGCGgccGUCCgcgUGCGGGGGGGucAGgGACAg -3'
miRNA:   3'- -CGCaa-CAGG---GCGCCUCUCU--UUgCUGU- -5'
5456 3' -52.9 NC_001798.1 + 76884 0.66 0.976979
Target:  5'- uGCGggccucccUG-CCCGCGGGGuGGAcCGACc -3'
miRNA:   3'- -CGCa-------ACaGGGCGCCUCuCUUuGCUGu -5'
5456 3' -52.9 NC_001798.1 + 54367 0.67 0.968775
Target:  5'- cGCGgcGUCCgGCccaccGGGGGGccGCGGCGc -3'
miRNA:   3'- -CGCaaCAGGgCG-----CCUCUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 39758 0.67 0.968775
Target:  5'- cCGUgcgGUUCC-CGGGGGGAAGcCGACc -3'
miRNA:   3'- cGCAa--CAGGGcGCCUCUCUUU-GCUGu -5'
5456 3' -52.9 NC_001798.1 + 77191 0.67 0.965627
Target:  5'- cGCGacggcaaGUCCCGCGGcGAcGGugGACGc -3'
miRNA:   3'- -CGCaa-----CAGGGCGCCuCUcUUugCUGU- -5'
5456 3' -52.9 NC_001798.1 + 6772 0.67 0.965627
Target:  5'- gGCGaUGUCUgCGCGGAGAuccauaaaagGGAACGGgAg -3'
miRNA:   3'- -CGCaACAGG-GCGCCUCU----------CUUUGCUgU- -5'
5456 3' -52.9 NC_001798.1 + 143698 0.67 0.965627
Target:  5'- ----cGUCCCaaacgggacuUGGAGAGggGCGACGg -3'
miRNA:   3'- cgcaaCAGGGc---------GCCUCUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 147521 0.67 0.962263
Target:  5'- uGCGUgUGUCUCGUGuGAGAG-AGCG-CGc -3'
miRNA:   3'- -CGCA-ACAGGGCGC-CUCUCuUUGCuGU- -5'
5456 3' -52.9 NC_001798.1 + 7200 0.67 0.958677
Target:  5'- gGCGaccaUGaUCCgGCGGcGGGGAAACGugGa -3'
miRNA:   3'- -CGCa---AC-AGGgCGCC-UCUCUUUGCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.