miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5456 3' -52.9 NC_001798.1 + 68603 0.67 0.958677
Target:  5'- ----aGUCCgCGCGGGGGGAGcUGGCu -3'
miRNA:   3'- cgcaaCAGG-GCGCCUCUCUUuGCUGu -5'
5456 3' -52.9 NC_001798.1 + 149985 0.68 0.954863
Target:  5'- cGCGgcG-CCCGCGGAcgccGGGGcgAGCGGCc -3'
miRNA:   3'- -CGCaaCaGGGCGCCU----CUCU--UUGCUGu -5'
5456 3' -52.9 NC_001798.1 + 23216 0.68 0.954863
Target:  5'- cGCGggccgcUGggUCCGCGGAccGGAGACGACGu -3'
miRNA:   3'- -CGCa-----ACa-GGGCGCCUc-UCUUUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 112760 0.68 0.954863
Target:  5'- aCGUcaucagCCCGCGGGGAGGgcgGACGcACGg -3'
miRNA:   3'- cGCAaca---GGGCGCCUCUCU---UUGC-UGU- -5'
5456 3' -52.9 NC_001798.1 + 51282 0.68 0.946097
Target:  5'- cGCGg-GcCCCGCGGGGAGGcuaccugggcccgAugGACc -3'
miRNA:   3'- -CGCaaCaGGGCGCCUCUCU-------------UugCUGu -5'
5456 3' -52.9 NC_001798.1 + 27230 0.68 0.942019
Target:  5'- cGCGggGgaggcggCCGCGG-GGGAGGCGGCc -3'
miRNA:   3'- -CGCaaCag-----GGCGCCuCUCUUUGCUGu -5'
5456 3' -52.9 NC_001798.1 + 56402 0.68 0.93726
Target:  5'- gGUGggGUCCCGCGGcGGGGGcuGGUGGCu -3'
miRNA:   3'- -CGCaaCAGGGCGCC-UCUCU--UUGCUGu -5'
5456 3' -52.9 NC_001798.1 + 90648 0.68 0.932258
Target:  5'- aGUGg---UCCGCGGAGAugccgcGGAACGACGc -3'
miRNA:   3'- -CGCaacaGGGCGCCUCU------CUUUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 70597 0.69 0.926475
Target:  5'- cGCGUccgccagUGUgCCGUGGAGuGGAuCGACc -3'
miRNA:   3'- -CGCA-------ACAgGGCGCCUCuCUUuGCUGu -5'
5456 3' -52.9 NC_001798.1 + 4620 0.69 0.921523
Target:  5'- cGCGccGUCgCGCuccGGGGGggGCGACGg -3'
miRNA:   3'- -CGCaaCAGgGCGc--CUCUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 49770 0.69 0.915791
Target:  5'- uGCGggGaguUCCCGUGGAGGcccGGCGACu -3'
miRNA:   3'- -CGCaaC---AGGGCGCCUCUcu-UUGCUGu -5'
5456 3' -52.9 NC_001798.1 + 64143 0.69 0.9036
Target:  5'- gGgGUcgGUgCUCGCGG-GGGAGACGGCGg -3'
miRNA:   3'- -CgCAa-CA-GGGCGCCuCUCUUUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 16175 0.7 0.890456
Target:  5'- gGCGg---CCCGCGGGGAccGggGgGACGc -3'
miRNA:   3'- -CGCaacaGGGCGCCUCU--CuuUgCUGU- -5'
5456 3' -52.9 NC_001798.1 + 44414 0.7 0.889775
Target:  5'- aUGggGUCCCGCGGcccagggcgucuuGGAGcacGGCGACGu -3'
miRNA:   3'- cGCaaCAGGGCGCC-------------UCUCu--UUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 125908 0.7 0.883536
Target:  5'- cGCGgcuaaaGUCCCGCGcGcgcuuAGAGAugauGCGACAg -3'
miRNA:   3'- -CGCaa----CAGGGCGC-C-----UCUCUu---UGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 78907 0.7 0.874199
Target:  5'- uGCGgagGUCCCuggaggaggccgagGCGGAGuGGGACGAg- -3'
miRNA:   3'- -CGCaa-CAGGG--------------CGCCUCuCUUUGCUgu -5'
5456 3' -52.9 NC_001798.1 + 81269 0.71 0.861429
Target:  5'- cGCGggacCuuGCGGGGGGGGAUGGCGg -3'
miRNA:   3'- -CGCaacaGggCGCCUCUCUUUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 27543 0.71 0.85363
Target:  5'- cGCGgcG-CgCGgGGGGAGggGCGGCGc -3'
miRNA:   3'- -CGCaaCaGgGCgCCUCUCuuUGCUGU- -5'
5456 3' -52.9 NC_001798.1 + 73935 0.71 0.85363
Target:  5'- aGgGaUGUCUgGUGGAGGGggGCGAg- -3'
miRNA:   3'- -CgCaACAGGgCGCCUCUCuuUGCUgu -5'
5456 3' -52.9 NC_001798.1 + 84727 0.71 0.845627
Target:  5'- cGCGgUGUCCUGCGuauGuGggGCGGCGg -3'
miRNA:   3'- -CGCaACAGGGCGCcu-CuCuuUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.