miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5456 5' -63.5 NC_001798.1 + 68952 0.65 0.606111
Target:  5'- cGCC-CCGGCCCGcGUCccgCCGUAGuuggucgugauguGGGCc -3'
miRNA:   3'- -CGGuGGUCGGGC-CGGa--GGCGUC-------------CUCG- -5'
5456 5' -63.5 NC_001798.1 + 144289 0.65 0.604169
Target:  5'- cGCCGaaacgCGGCCCaGUCcaggggcacggaagUCgGCAGGGGCg -3'
miRNA:   3'- -CGGUg----GUCGGGcCGG--------------AGgCGUCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 79179 0.65 0.604169
Target:  5'- aCCGCCcugugcGCCCGGCUgcgggaugagguggUgCGCAGGGuGCc -3'
miRNA:   3'- cGGUGGu-----CGGGCCGG--------------AgGCGUCCU-CG- -5'
5456 5' -63.5 NC_001798.1 + 122255 0.66 0.597379
Target:  5'- gGCgACCGGCCCGaCUggCUGU-GGAGCc -3'
miRNA:   3'- -CGgUGGUCGGGCcGGa-GGCGuCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 102409 0.66 0.597379
Target:  5'- cCCACCAGCgCGGCgaUCUGggccucCAGGGGa -3'
miRNA:   3'- cGGUGGUCGgGCCGg-AGGC------GUCCUCg -5'
5456 5' -63.5 NC_001798.1 + 137456 0.66 0.597379
Target:  5'- -gCGCUcGCCCGGaaaUCgGCGGGGGUu -3'
miRNA:   3'- cgGUGGuCGGGCCgg-AGgCGUCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 140498 0.66 0.597379
Target:  5'- aUCACCAaCCCGGCCaaccuUCCggGguGGAcGCg -3'
miRNA:   3'- cGGUGGUcGGGCCGG-----AGG--CguCCU-CG- -5'
5456 5' -63.5 NC_001798.1 + 141051 0.66 0.597379
Target:  5'- cGCgACCcagaGGaCCCuGGCCUacggCCGCcuagGGGAGCu -3'
miRNA:   3'- -CGgUGG----UC-GGG-CCGGA----GGCG----UCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 150740 0.66 0.597379
Target:  5'- gGCCACUcucGGCacgaCGGCCgcgaCgGCAGG-GCc -3'
miRNA:   3'- -CGGUGG---UCGg---GCCGGa---GgCGUCCuCG- -5'
5456 5' -63.5 NC_001798.1 + 85399 0.66 0.597379
Target:  5'- cGCC-CCuGUCUGGUCUgCCGCAccaucGAGCu -3'
miRNA:   3'- -CGGuGGuCGGGCCGGA-GGCGUc----CUCG- -5'
5456 5' -63.5 NC_001798.1 + 108681 0.66 0.597379
Target:  5'- cGCCGCC--CCCggGGCCgcCCGCGGGgacaccgaGGCa -3'
miRNA:   3'- -CGGUGGucGGG--CCGGa-GGCGUCC--------UCG- -5'
5456 5' -63.5 NC_001798.1 + 42854 0.66 0.59641
Target:  5'- cGCCGCCAGCgccCCGcGCCUaaagugaCC-CAGG-GCc -3'
miRNA:   3'- -CGGUGGUCG---GGC-CGGA-------GGcGUCCuCG- -5'
5456 5' -63.5 NC_001798.1 + 20280 0.66 0.587698
Target:  5'- cCCACguGCgCGGCC-CCagGCGGGuccGGCa -3'
miRNA:   3'- cGGUGguCGgGCCGGaGG--CGUCC---UCG- -5'
5456 5' -63.5 NC_001798.1 + 57706 0.66 0.587698
Target:  5'- gGCCaugACCAGaagagcCCCGGCCcCCGCgaAGGAc- -3'
miRNA:   3'- -CGG---UGGUC------GGGCCGGaGGCG--UCCUcg -5'
5456 5' -63.5 NC_001798.1 + 58980 0.66 0.587698
Target:  5'- cGUCGgCGGCCgGGCgaaCGCGGGGGg -3'
miRNA:   3'- -CGGUgGUCGGgCCGgagGCGUCCUCg -5'
5456 5' -63.5 NC_001798.1 + 69093 0.66 0.587698
Target:  5'- gGCCcgcCCGGaCCCcagggcggaGGCCUCC--AGGAGCu -3'
miRNA:   3'- -CGGu--GGUC-GGG---------CCGGAGGcgUCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 87002 0.66 0.587698
Target:  5'- cGCCGCCcucGCCCagacGcCCUCCG-AGGAGa -3'
miRNA:   3'- -CGGUGGu--CGGGc---C-GGAGGCgUCCUCg -5'
5456 5' -63.5 NC_001798.1 + 135063 0.66 0.587698
Target:  5'- gGCCGCCuccuGCCC-GCCUUU-CGGGaAGCg -3'
miRNA:   3'- -CGGUGGu---CGGGcCGGAGGcGUCC-UCG- -5'
5456 5' -63.5 NC_001798.1 + 135206 0.66 0.587698
Target:  5'- gGCCGCCcucgcgGGCCUcggggaGGCCgggCUGCcggaagcccGGGGGCg -3'
miRNA:   3'- -CGGUGG------UCGGG------CCGGa--GGCG---------UCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 2620 0.66 0.587698
Target:  5'- cGCCGCCcggcggcGCCCuGGCCgggGCGGG-GCu -3'
miRNA:   3'- -CGGUGGu------CGGG-CCGGaggCGUCCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.