miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5456 5' -63.5 NC_001798.1 + 129 0.66 0.56843
Target:  5'- cCC-CCGGagCCGGCCgcucccCCGCGGGcGCc -3'
miRNA:   3'- cGGuGGUCg-GGCCGGa-----GGCGUCCuCG- -5'
5456 5' -63.5 NC_001798.1 + 480 0.73 0.230706
Target:  5'- gGCCGCCuccCCCGcGCC-CCGCcccGGGGGCu -3'
miRNA:   3'- -CGGUGGuc-GGGC-CGGaGGCG---UCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 1129 0.68 0.466395
Target:  5'- uCCACgGGCUCGcGCCUCgGCGGcGuGGCc -3'
miRNA:   3'- cGGUGgUCGGGC-CGGAGgCGUC-C-UCG- -5'
5456 5' -63.5 NC_001798.1 + 1216 0.75 0.181896
Target:  5'- cCCGCgCGGCCCgcGGCCgacgcccagcguaUCUGCGGGGGCg -3'
miRNA:   3'- cGGUG-GUCGGG--CCGG-------------AGGCGUCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 1339 0.68 0.484304
Target:  5'- cGCCG-CGGCCCGcGCagCUCCGCcGG-GCc -3'
miRNA:   3'- -CGGUgGUCGGGC-CG--GAGGCGuCCuCG- -5'
5456 5' -63.5 NC_001798.1 + 1496 0.76 0.151788
Target:  5'- cGUCGCCcgcgcccgaggcggcGGCCCGGCCgUCCaGCgccGGGAGCa -3'
miRNA:   3'- -CGGUGG---------------UCGGGCCGG-AGG-CG---UCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 1749 0.67 0.539846
Target:  5'- cGCCGCCGGCCagcgcaCGGCgCacugcaCgGCGGGcAGCa -3'
miRNA:   3'- -CGGUGGUCGG------GCCG-Ga-----GgCGUCC-UCG- -5'
5456 5' -63.5 NC_001798.1 + 1822 0.68 0.465508
Target:  5'- aCCACgGGCCCgucggcgGGCCagUCCGCGGcGcGCa -3'
miRNA:   3'- cGGUGgUCGGG-------CCGG--AGGCGUC-CuCG- -5'
5456 5' -63.5 NC_001798.1 + 2072 0.69 0.390421
Target:  5'- cCCGCCGcGCUCGGCggaccaCUCCGgGGGGGg -3'
miRNA:   3'- cGGUGGU-CGGGCCG------GAGGCgUCCUCg -5'
5456 5' -63.5 NC_001798.1 + 2361 0.68 0.448835
Target:  5'- uCCGugAGCUCGGCCacggcCCGCGGGGcGCa -3'
miRNA:   3'- cGGUggUCGGGCCGGa----GGCGUCCU-CG- -5'
5456 5' -63.5 NC_001798.1 + 2458 0.69 0.413191
Target:  5'- aGCCGCCcugcgggucggGGCCCucggcgGGCCggcgggucagcgCCGCGGGGcGCg -3'
miRNA:   3'- -CGGUGG-----------UCGGG------CCGGa-----------GGCGUCCU-CG- -5'
5456 5' -63.5 NC_001798.1 + 2540 0.68 0.431646
Target:  5'- gGCgGggGGCgCGGCCcCCGCGGGAGg -3'
miRNA:   3'- -CGgUggUCGgGCCGGaGGCGUCCUCg -5'
5456 5' -63.5 NC_001798.1 + 2620 0.66 0.587698
Target:  5'- cGCCGCCcggcggcGCCCuGGCCgggGCGGG-GCu -3'
miRNA:   3'- -CGGUGGu------CGGG-CCGGaggCGUCCuCG- -5'
5456 5' -63.5 NC_001798.1 + 2785 0.66 0.578047
Target:  5'- aGCuCAgCAGgCgCGGgCUCCGCGGcAGCg -3'
miRNA:   3'- -CG-GUgGUCgG-GCCgGAGGCGUCcUCG- -5'
5456 5' -63.5 NC_001798.1 + 2875 0.71 0.302542
Target:  5'- uGCCGCCGGCCacgcgcaGGuCCcCgCGCAGGcGCa -3'
miRNA:   3'- -CGGUGGUCGGg------CC-GGaG-GCGUCCuCG- -5'
5456 5' -63.5 NC_001798.1 + 2987 0.76 0.143152
Target:  5'- gGCgGCCGGCCCgcgGGCCccgggCGCGGGGGCg -3'
miRNA:   3'- -CGgUGGUCGGG---CCGGag---GCGUCCUCG- -5'
5456 5' -63.5 NC_001798.1 + 3031 0.67 0.511763
Target:  5'- gGCUccgGCCAGcCCCGGCacggCCGcCAGGucGCc -3'
miRNA:   3'- -CGG---UGGUC-GGGCCGga--GGC-GUCCu-CG- -5'
5456 5' -63.5 NC_001798.1 + 3124 0.73 0.230706
Target:  5'- gGCCACgCGGCCC-GCCUCCGCGcGccGGCc -3'
miRNA:   3'- -CGGUG-GUCGGGcCGGAGGCGUcC--UCG- -5'
5456 5' -63.5 NC_001798.1 + 3189 0.68 0.466395
Target:  5'- cGUCGUCGGcCCCGGCCggCGCGGaGGCg -3'
miRNA:   3'- -CGGUGGUC-GGGCCGGagGCGUCcUCG- -5'
5456 5' -63.5 NC_001798.1 + 3531 0.67 0.534185
Target:  5'- gGCC-CCAGCCgaagCGGCCcgCCGCcauggcguaccccagGuGGGGCa -3'
miRNA:   3'- -CGGuGGUCGG----GCCGGa-GGCG---------------U-CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.