miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5457 3' -59.9 NC_001798.1 + 18855 0.66 0.791037
Target:  5'- cUUCGCAggcuggccgagccucUGAUGGACUUGCCCaaauucacCCGAc -3'
miRNA:   3'- aGGGCGU---------------ACUGCCUGAGCGGGa-------GGCU- -5'
5457 3' -59.9 NC_001798.1 + 109089 0.66 0.787511
Target:  5'- gCCCGCcgacaACGGcucggcGCUggaCGCCCUCCGGc -3'
miRNA:   3'- aGGGCGuac--UGCC------UGA---GCGGGAGGCU- -5'
5457 3' -59.9 NC_001798.1 + 30820 0.66 0.778607
Target:  5'- aCCCGCG-GACGGcCcCGCgCUCCc- -3'
miRNA:   3'- aGGGCGUaCUGCCuGaGCGgGAGGcu -5'
5457 3' -59.9 NC_001798.1 + 120674 0.66 0.778607
Target:  5'- cUCCUGCAUGAaggaguCGGGCagaaacagaUCgGCCgUCCGGc -3'
miRNA:   3'- -AGGGCGUACU------GCCUG---------AG-CGGgAGGCU- -5'
5457 3' -59.9 NC_001798.1 + 138182 0.66 0.778607
Target:  5'- aCCCGCG-GcCGGuGC-CGCCCUugCCGAa -3'
miRNA:   3'- aGGGCGUaCuGCC-UGaGCGGGA--GGCU- -5'
5457 3' -59.9 NC_001798.1 + 150155 0.66 0.778607
Target:  5'- aCCCGCGccucuuccgggGGCGGGCcgcCGCCCccUCCGc -3'
miRNA:   3'- aGGGCGUa----------CUGCCUGa--GCGGG--AGGCu -5'
5457 3' -59.9 NC_001798.1 + 47967 0.66 0.76958
Target:  5'- gCCCGCGgcaGGC-GACcCGCCCaggCCGAc -3'
miRNA:   3'- aGGGCGUa--CUGcCUGaGCGGGa--GGCU- -5'
5457 3' -59.9 NC_001798.1 + 43138 0.66 0.76958
Target:  5'- gUCCCGCGUcacGCGGGCccagUCGuCCCgcgCCGc -3'
miRNA:   3'- -AGGGCGUAc--UGCCUG----AGC-GGGa--GGCu -5'
5457 3' -59.9 NC_001798.1 + 121117 0.66 0.76958
Target:  5'- uUCCgGCAccggGAaGGGCUCGCaCCgCCGGc -3'
miRNA:   3'- -AGGgCGUa---CUgCCUGAGCG-GGaGGCU- -5'
5457 3' -59.9 NC_001798.1 + 128257 0.66 0.768671
Target:  5'- gCCgGCAUGguggaccGCGGGCUCGgccggcaCCUCUGGc -3'
miRNA:   3'- aGGgCGUAC-------UGCCUGAGCg------GGAGGCU- -5'
5457 3' -59.9 NC_001798.1 + 151276 0.66 0.760439
Target:  5'- gCCCGCAcGGCcGcCUCGgCCUCCa- -3'
miRNA:   3'- aGGGCGUaCUGcCuGAGCgGGAGGcu -5'
5457 3' -59.9 NC_001798.1 + 79708 0.66 0.760439
Target:  5'- cCCCGCuuccGACGGACguccucgaaUCGgCC-CCGAc -3'
miRNA:   3'- aGGGCGua--CUGCCUG---------AGCgGGaGGCU- -5'
5457 3' -59.9 NC_001798.1 + 4081 0.66 0.754903
Target:  5'- gUCgCCGCGgggguccgggccggGGCGGGCUCGgCCCUgggcgggcucggCCGGg -3'
miRNA:   3'- -AG-GGCGUa-------------CUGCCUGAGC-GGGA------------GGCU- -5'
5457 3' -59.9 NC_001798.1 + 152376 0.66 0.751192
Target:  5'- cUCCCGC----CGGGC-CGCCgCUCCGu -3'
miRNA:   3'- -AGGGCGuacuGCCUGaGCGG-GAGGCu -5'
5457 3' -59.9 NC_001798.1 + 95005 0.66 0.751192
Target:  5'- cCCCGCAgGGCGGcGCggGCCUggaggCCGGg -3'
miRNA:   3'- aGGGCGUaCUGCC-UGagCGGGa----GGCU- -5'
5457 3' -59.9 NC_001798.1 + 92566 0.66 0.751192
Target:  5'- gCCCGCAuuuUGgcuucGCGGACUaCGCgCC-CCGGc -3'
miRNA:   3'- aGGGCGU---AC-----UGCCUGA-GCG-GGaGGCU- -5'
5457 3' -59.9 NC_001798.1 + 1116 0.66 0.741847
Target:  5'- cUCCGCGUccauguccACGGGCUCGCgCCUCgGc -3'
miRNA:   3'- aGGGCGUAc-------UGCCUGAGCG-GGAGgCu -5'
5457 3' -59.9 NC_001798.1 + 137916 0.66 0.741847
Target:  5'- cUCCGCcgGGCGGcC-CGCgCCUCCc- -3'
miRNA:   3'- aGGGCGuaCUGCCuGaGCG-GGAGGcu -5'
5457 3' -59.9 NC_001798.1 + 40274 0.66 0.741847
Target:  5'- aCCCGCAcGACcgGGGC-CgGCUUUCCGAa -3'
miRNA:   3'- aGGGCGUaCUG--CCUGaG-CGGGAGGCU- -5'
5457 3' -59.9 NC_001798.1 + 16421 0.67 0.732413
Target:  5'- aCCCGCAcgucuuugggGACGGcgGCUCGCCg-CCGc -3'
miRNA:   3'- aGGGCGUa---------CUGCC--UGAGCGGgaGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.