miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5457 5' -53.2 NC_001798.1 + 128245 0.66 0.977534
Target:  5'- uCGCUGGAG-GCG-G-CCGGCaUGGUg -3'
miRNA:   3'- -GCGACCUCaUGCuCaGGUUGaACCGg -5'
5457 5' -53.2 NC_001798.1 + 92254 0.66 0.975293
Target:  5'- gGCcgaUGGGGUACGuguauggccgcgccuGUCCGGCcgaaGGCCu -3'
miRNA:   3'- gCG---ACCUCAUGCu--------------CAGGUUGaa--CCGG- -5'
5457 5' -53.2 NC_001798.1 + 32274 0.66 0.975034
Target:  5'- gCGCUGGGGagagACGAGaaaCCuccCUcGGCCc -3'
miRNA:   3'- -GCGACCUCa---UGCUCa--GGuu-GAaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 77741 0.66 0.974246
Target:  5'- gCGCUGGAccgcgucgagaaccGcgcCGAGUUCGACgUGGUCg -3'
miRNA:   3'- -GCGACCU--------------Cau-GCUCAGGUUGaACCGG- -5'
5457 5' -53.2 NC_001798.1 + 109108 0.66 0.972337
Target:  5'- gCGCUGGA---CGcccUCCGGCgggUGGCCg -3'
miRNA:   3'- -GCGACCUcauGCuc-AGGUUGa--ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 34114 0.66 0.969435
Target:  5'- gCGgUGGGcGUACGGGcCCGACccGcGCCu -3'
miRNA:   3'- -GCgACCU-CAUGCUCaGGUUGaaC-CGG- -5'
5457 5' -53.2 NC_001798.1 + 72928 0.66 0.969435
Target:  5'- gCGCUGGucGUggcGCGcuucgCCAGCUcGGCCg -3'
miRNA:   3'- -GCGACCu-CA---UGCuca--GGUUGAaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 15084 0.66 0.966323
Target:  5'- uGUUGGGGUucgGAGUUCGgaagGCgaGGCCg -3'
miRNA:   3'- gCGACCUCAug-CUCAGGU----UGaaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 79054 0.67 0.962994
Target:  5'- uGUcGGGGcUGCGGGcCCAGCc-GGCCu -3'
miRNA:   3'- gCGaCCUC-AUGCUCaGGUUGaaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 119389 0.67 0.959441
Target:  5'- gGCUGGcGcacGCGGG-CCAACUcggggacauccUGGCCc -3'
miRNA:   3'- gCGACCuCa--UGCUCaGGUUGA-----------ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 3962 0.67 0.951649
Target:  5'- gCGCcGGAGgccGCGucggcGUCCAGCUcgaccgccggGGCCg -3'
miRNA:   3'- -GCGaCCUCa--UGCu----CAGGUUGAa---------CCGG- -5'
5457 5' -53.2 NC_001798.1 + 66760 0.67 0.951649
Target:  5'- cCGcCUGGGGUGCGG---CGGCgugGGCCg -3'
miRNA:   3'- -GC-GACCUCAUGCUcagGUUGaa-CCGG- -5'
5457 5' -53.2 NC_001798.1 + 86314 0.67 0.951649
Target:  5'- uGCUGG--UGCGGG-CCuACUggcUGGCCa -3'
miRNA:   3'- gCGACCucAUGCUCaGGuUGA---ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 116941 0.67 0.951649
Target:  5'- gCGCUGuu-UGCGGGcgCCGACcacgUGGCCa -3'
miRNA:   3'- -GCGACcucAUGCUCa-GGUUGa---ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 150137 0.68 0.942913
Target:  5'- cCGC-GGGGccCGAGUCCGACccGcGCCu -3'
miRNA:   3'- -GCGaCCUCauGCUCAGGUUGaaC-CGG- -5'
5457 5' -53.2 NC_001798.1 + 140208 0.68 0.92799
Target:  5'- uGCUGGuGUGCGuGgggucgCCGACccagacGGCCu -3'
miRNA:   3'- gCGACCuCAUGCuCa-----GGUUGaa----CCGG- -5'
5457 5' -53.2 NC_001798.1 + 30758 0.68 0.921966
Target:  5'- cCGCgUGGAggccgaggcggccGUGCGGG-CCGGCacGGCCg -3'
miRNA:   3'- -GCG-ACCU-------------CAUGCUCaGGUUGaaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 122223 0.68 0.916816
Target:  5'- gGCUGGAccGCGGGUgggaAGCUcUGGCCg -3'
miRNA:   3'- gCGACCUcaUGCUCAgg--UUGA-ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 52874 0.69 0.910861
Target:  5'- uGCUGGGGccGCGGGUCCGcGCgUGGaCa -3'
miRNA:   3'- gCGACCUCa-UGCUCAGGU-UGaACCgG- -5'
5457 5' -53.2 NC_001798.1 + 12894 0.69 0.891551
Target:  5'- uGCUGGuGUACGGGg---GCUuggGGCCg -3'
miRNA:   3'- gCGACCuCAUGCUCagguUGAa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.