miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5457 5' -53.2 NC_001798.1 + 61953 0.74 0.632208
Target:  5'- gCGCUGGGGUACGccuacaucaacucgGGUC-AGCUggaGGCCg -3'
miRNA:   3'- -GCGACCUCAUGC--------------UCAGgUUGAa--CCGG- -5'
5457 5' -53.2 NC_001798.1 + 101014 0.73 0.717471
Target:  5'- gCGCggagGGGGgcggguuugACGAGgCCAAgUUGGCCg -3'
miRNA:   3'- -GCGa---CCUCa--------UGCUCaGGUUgAACCGG- -5'
5457 5' -53.2 NC_001798.1 + 125316 0.72 0.757045
Target:  5'- aGCUcGGGGgcCaGGaacUCCAGCUUGGCCg -3'
miRNA:   3'- gCGA-CCUCauGcUC---AGGUUGAACCGG- -5'
5457 5' -53.2 NC_001798.1 + 58510 0.72 0.77335
Target:  5'- uCGCUGGuGGUGCGucgacgguaacaggGGUCCGugguCUguUGGCCg -3'
miRNA:   3'- -GCGACC-UCAUGC--------------UCAGGUu---GA--ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 13487 0.72 0.77619
Target:  5'- uGCUGGGGggcuggaACGGGUCCuccaGGCUcGGCUg -3'
miRNA:   3'- gCGACCUCa------UGCUCAGG----UUGAaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 144221 0.72 0.785569
Target:  5'- gCGCgguuagGGGGUucGCGAGcUCCGGCUccaacaggGGCCg -3'
miRNA:   3'- -GCGa-----CCUCA--UGCUC-AGGUUGAa-------CCGG- -5'
5457 5' -53.2 NC_001798.1 + 51540 0.71 0.821576
Target:  5'- cCGCgUGGG--ACGAGUCCGugcGCUcGGCCc -3'
miRNA:   3'- -GCG-ACCUcaUGCUCAGGU---UGAaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 105578 0.7 0.854761
Target:  5'- gCGCgucgaaagGGuAGUACGGGUCCAugUUcgagGGCg -3'
miRNA:   3'- -GCGa-------CC-UCAUGCUCAGGUugAA----CCGg -5'
5457 5' -53.2 NC_001798.1 + 139059 0.7 0.862557
Target:  5'- gGCUGGAGgccGCGGG-CCAccACgUGGCg -3'
miRNA:   3'- gCGACCUCa--UGCUCaGGU--UGaACCGg -5'
5457 5' -53.2 NC_001798.1 + 59856 0.7 0.87014
Target:  5'- gGCUcGGAGgAgGAGUCCuGGCUguggucgGGCCg -3'
miRNA:   3'- gCGA-CCUCaUgCUCAGG-UUGAa------CCGG- -5'
5457 5' -53.2 NC_001798.1 + 92374 0.7 0.87014
Target:  5'- cCG-UGGAGaGCGGGUuugaggCCAACgUGGCCg -3'
miRNA:   3'- -GCgACCUCaUGCUCA------GGUUGaACCGG- -5'
5457 5' -53.2 NC_001798.1 + 12894 0.69 0.891551
Target:  5'- uGCUGGuGUACGGGg---GCUuggGGCCg -3'
miRNA:   3'- gCGACCuCAUGCUCagguUGAa--CCGG- -5'
5457 5' -53.2 NC_001798.1 + 52874 0.69 0.910861
Target:  5'- uGCUGGGGccGCGGGUCCGcGCgUGGaCa -3'
miRNA:   3'- gCGACCUCa-UGCUCAGGU-UGaACCgG- -5'
5457 5' -53.2 NC_001798.1 + 122223 0.68 0.916816
Target:  5'- gGCUGGAccGCGGGUgggaAGCUcUGGCCg -3'
miRNA:   3'- gCGACCUcaUGCUCAgg--UUGA-ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 30758 0.68 0.921966
Target:  5'- cCGCgUGGAggccgaggcggccGUGCGGG-CCGGCacGGCCg -3'
miRNA:   3'- -GCG-ACCU-------------CAUGCUCaGGUUGaaCCGG- -5'
5457 5' -53.2 NC_001798.1 + 140208 0.68 0.92799
Target:  5'- uGCUGGuGUGCGuGgggucgCCGACccagacGGCCu -3'
miRNA:   3'- gCGACCuCAUGCuCa-----GGUUGaa----CCGG- -5'
5457 5' -53.2 NC_001798.1 + 150137 0.68 0.942913
Target:  5'- cCGC-GGGGccCGAGUCCGACccGcGCCu -3'
miRNA:   3'- -GCGaCCUCauGCUCAGGUUGaaC-CGG- -5'
5457 5' -53.2 NC_001798.1 + 86314 0.67 0.951649
Target:  5'- uGCUGG--UGCGGG-CCuACUggcUGGCCa -3'
miRNA:   3'- gCGACCucAUGCUCaGGuUGA---ACCGG- -5'
5457 5' -53.2 NC_001798.1 + 3962 0.67 0.951649
Target:  5'- gCGCcGGAGgccGCGucggcGUCCAGCUcgaccgccggGGCCg -3'
miRNA:   3'- -GCGaCCUCa--UGCu----CAGGUUGAa---------CCGG- -5'
5457 5' -53.2 NC_001798.1 + 66760 0.67 0.951649
Target:  5'- cCGcCUGGGGUGCGG---CGGCgugGGCCg -3'
miRNA:   3'- -GC-GACCUCAUGCUcagGUUGaa-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.