miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5458 3' -56.5 NC_001798.1 + 4080 0.66 0.884718
Target:  5'- gGUCGCcGCGGGGGuCCGggccgGGGCGGGc -3'
miRNA:   3'- -CAGCGuCGUCUCC-GGCag---CUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 54686 0.66 0.880482
Target:  5'- cUCGCGGCucagcgcGAGGCCGcCGGggucuacgacgcgguGCGGAc -3'
miRNA:   3'- cAGCGUCGu------CUCCGGCaGCU---------------UGUCUa -5'
5458 3' -56.5 NC_001798.1 + 31033 0.66 0.854981
Target:  5'- gGUCG-GGCGGGGGUCGggcgggggUCGGGCGGGg -3'
miRNA:   3'- -CAGCgUCGUCUCCGGC--------AGCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 31000 0.66 0.854981
Target:  5'- gGUCG-GGCGGGGGUCGggcgggggUCGGGCGGGg -3'
miRNA:   3'- -CAGCgUCGUCUCCGGC--------AGCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 30967 0.66 0.854981
Target:  5'- gGUCG-GGCGGGGGUCGggcgggggUCGGGCGGGg -3'
miRNA:   3'- -CAGCgUCGUCUCCGGC--------AGCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 10900 0.67 0.838857
Target:  5'- --gGUGGCAGGaGCCGUCGGucgggGCAGAUc -3'
miRNA:   3'- cagCGUCGUCUcCGGCAGCU-----UGUCUA- -5'
5458 3' -56.5 NC_001798.1 + 97219 0.67 0.830504
Target:  5'- -cCGCcGCGGuGGCCGUgGAGCuGGc -3'
miRNA:   3'- caGCGuCGUCuCCGGCAgCUUGuCUa -5'
5458 3' -56.5 NC_001798.1 + 130706 0.67 0.830504
Target:  5'- -cCGCGGCGGcGGCCGU-GcACAGGa -3'
miRNA:   3'- caGCGUCGUCuCCGGCAgCuUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 97467 0.67 0.830504
Target:  5'- -gCGCGGCuGGGGGCCGgcggcgCGAcCGGGg -3'
miRNA:   3'- caGCGUCG-UCUCCGGCa-----GCUuGUCUa -5'
5458 3' -56.5 NC_001798.1 + 1274 0.67 0.821967
Target:  5'- cGUCGCgcagcaccAGCGGGGGCgCGUCGccguCGGGc -3'
miRNA:   3'- -CAGCG--------UCGUCUCCG-GCAGCuu--GUCUa -5'
5458 3' -56.5 NC_001798.1 + 132142 0.67 0.804376
Target:  5'- -gCGCcGcCGGGGGCCGgCGGGCGGGg -3'
miRNA:   3'- caGCGuC-GUCUCCGGCaGCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 27005 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26811 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26841 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26871 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26901 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26945 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26975 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 81103 0.68 0.776819
Target:  5'- cUCGCGGC-GAGcGCCGcCGAcGCGGAc -3'
miRNA:   3'- cAGCGUCGuCUC-CGGCaGCU-UGUCUa -5'
5458 3' -56.5 NC_001798.1 + 79133 0.68 0.767357
Target:  5'- -gCGC-GCGGAGGCCGUgGAGgAGc- -3'
miRNA:   3'- caGCGuCGUCUCCGGCAgCUUgUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.