miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5458 3' -56.5 NC_001798.1 + 1274 0.67 0.821967
Target:  5'- cGUCGCgcagcaccAGCGGGGGCgCGUCGccguCGGGc -3'
miRNA:   3'- -CAGCG--------UCGUCUCCG-GCAGCuu--GUCUa -5'
5458 3' -56.5 NC_001798.1 + 1627 0.72 0.554565
Target:  5'- -cCGCGGCAGAGGCgcagcggcggcgCGUCGGgguACAGGc -3'
miRNA:   3'- caGCGUCGUCUCCG------------GCAGCU---UGUCUa -5'
5458 3' -56.5 NC_001798.1 + 4080 0.66 0.884718
Target:  5'- gGUCGCcGCGGGGGuCCGggccgGGGCGGGc -3'
miRNA:   3'- -CAGCGuCGUCUCC-GGCag---CUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 9944 0.7 0.626307
Target:  5'- aUCGCGGCGGGGGCguaGUCcugGAACAGc- -3'
miRNA:   3'- cAGCGUCGUCUCCGg--CAG---CUUGUCua -5'
5458 3' -56.5 NC_001798.1 + 10900 0.67 0.838857
Target:  5'- --gGUGGCAGGaGCCGUCGGucgggGCAGAUc -3'
miRNA:   3'- cagCGUCGUCUcCGGCAGCU-----UGUCUA- -5'
5458 3' -56.5 NC_001798.1 + 14912 0.71 0.574891
Target:  5'- --aGCAGgGGAGGCCGUUaggaaccaGAACAGGg -3'
miRNA:   3'- cagCGUCgUCUCCGGCAG--------CUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 22964 0.7 0.677825
Target:  5'- --gGCGGCcccggcguccggGGAGGCCGUCGAcgagccugccGCGGAc -3'
miRNA:   3'- cagCGUCG------------UCUCCGGCAGCU----------UGUCUa -5'
5458 3' -56.5 NC_001798.1 + 23674 0.69 0.708347
Target:  5'- -gCGCGGCGGuGGCCGgccgCGAcgccACGGGc -3'
miRNA:   3'- caGCGUCGUCuCCGGCa---GCU----UGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26811 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26841 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26871 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26901 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26945 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 26975 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 27005 0.68 0.786148
Target:  5'- gGUCGggcgGGCGGGGGUCGggCGGGCGGGg -3'
miRNA:   3'- -CAGCg---UCGUCUCCGGCa-GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 28817 0.71 0.615984
Target:  5'- -cCGCcGCGGgcccGGGCCGUCGGGCGGu- -3'
miRNA:   3'- caGCGuCGUC----UCCGGCAGCUUGUCua -5'
5458 3' -56.5 NC_001798.1 + 30936 0.69 0.728381
Target:  5'- --gGCGGCGGGGGUCGggcggggggCGGGCGGGg -3'
miRNA:   3'- cagCGUCGUCUCCGGCa--------GCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 30967 0.66 0.854981
Target:  5'- gGUCG-GGCGGGGGUCGggcgggggUCGGGCGGGg -3'
miRNA:   3'- -CAGCgUCGUCUCCGGC--------AGCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 31000 0.66 0.854981
Target:  5'- gGUCG-GGCGGGGGUCGggcgggggUCGGGCGGGg -3'
miRNA:   3'- -CAGCgUCGUCUCCGGC--------AGCUUGUCUa -5'
5458 3' -56.5 NC_001798.1 + 31033 0.66 0.854981
Target:  5'- gGUCG-GGCGGGGGUCGggcgggggUCGGGCGGGg -3'
miRNA:   3'- -CAGCgUCGUCUCCGGC--------AGCUUGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.