miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5458 5' -58.9 NC_001798.1 + 32421 0.66 0.794776
Target:  5'- cCAUCgcggggGuCUCGaGCGU-CGUGGCCCu- -3'
miRNA:   3'- aGUAGa-----C-GAGC-CGCAuGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 3476 0.66 0.794776
Target:  5'- --uUCUGCgcgCGGuCGUAgcgGCGGCUCAUg -3'
miRNA:   3'- aguAGACGa--GCC-GCAUg--CGCCGGGUA- -5'
5458 5' -58.9 NC_001798.1 + 54986 0.66 0.793881
Target:  5'- aCAUCUGCccucgcCGGCGUcuugccgGCGgGGCCg-- -3'
miRNA:   3'- aGUAGACGa-----GCCGCA-------UGCgCCGGgua -5'
5458 5' -58.9 NC_001798.1 + 35582 0.66 0.776611
Target:  5'- gCGgcgCUGCUCGGC---UGCGGCCgCGg -3'
miRNA:   3'- aGUa--GACGAGCCGcauGCGCCGG-GUa -5'
5458 5' -58.9 NC_001798.1 + 4774 0.66 0.776611
Target:  5'- gCAUCgGCggCGGCGU-CGuCGGCCUc- -3'
miRNA:   3'- aGUAGaCGa-GCCGCAuGC-GCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 106472 0.66 0.776611
Target:  5'- -aGUCUG---GGCG-GCGCGGCCCGa -3'
miRNA:   3'- agUAGACgagCCGCaUGCGCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 130071 0.66 0.767334
Target:  5'- gUCGUaaauggGCUCGGCGU-CGggcacaGGCCCGg -3'
miRNA:   3'- -AGUAga----CGAGCCGCAuGCg-----CCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 79520 0.66 0.767334
Target:  5'- gUAUCUGCgcgcCGGCGgagaccCGgGGCCCc- -3'
miRNA:   3'- aGUAGACGa---GCCGCau----GCgCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 4961 0.66 0.767334
Target:  5'- cCAUCgcgacCUCGGCcc-CGCGGCCCu- -3'
miRNA:   3'- aGUAGac---GAGCCGcauGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 143040 0.66 0.757939
Target:  5'- gCAcCUGCgCGGCGUugGCGcGCUUg- -3'
miRNA:   3'- aGUaGACGaGCCGCAugCGC-CGGGua -5'
5458 5' -58.9 NC_001798.1 + 105182 0.66 0.757939
Target:  5'- cCAUCUcCgCGGCG-GCGgGGCCCGc -3'
miRNA:   3'- aGUAGAcGaGCCGCaUGCgCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 111407 0.66 0.748435
Target:  5'- -gGUCggGCUCagGGCcaGCGCGGCCCc- -3'
miRNA:   3'- agUAGa-CGAG--CCGcaUGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 152395 0.67 0.738832
Target:  5'- cCGUC-GCUCGcagugccgggguGCGaAUGCGGCCCGa -3'
miRNA:   3'- aGUAGaCGAGC------------CGCaUGCGCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 60153 0.67 0.729138
Target:  5'- cCGUCU---UGGCGUugGCGGCCg-- -3'
miRNA:   3'- aGUAGAcgaGCCGCAugCGCCGGgua -5'
5458 5' -58.9 NC_001798.1 + 110467 0.67 0.729138
Target:  5'- uUCAUCUGCU-GGCcuuugacACGCuGCCCAUc -3'
miRNA:   3'- -AGUAGACGAgCCGca-----UGCGcCGGGUA- -5'
5458 5' -58.9 NC_001798.1 + 54354 0.67 0.719361
Target:  5'- cCAUcCUGCgccucgCGGCGU-C-CGGCCCAc -3'
miRNA:   3'- aGUA-GACGa-----GCCGCAuGcGCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 150361 0.67 0.719361
Target:  5'- gCGUCcaccgGCaCGGCGggcgGCGCGgGCCCGg -3'
miRNA:   3'- aGUAGa----CGaGCCGCa---UGCGC-CGGGUa -5'
5458 5' -58.9 NC_001798.1 + 153825 0.67 0.719361
Target:  5'- gCAg--GCgCGGCGUGCGgGGCCUc- -3'
miRNA:   3'- aGUagaCGaGCCGCAUGCgCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 95301 0.67 0.699597
Target:  5'- uUUGUgUGCgCGGCGUcgagucucggggGCGgGGCCCAc -3'
miRNA:   3'- -AGUAgACGaGCCGCA------------UGCgCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 71086 0.67 0.699597
Target:  5'- gCGUCaGCccgcggUCGGCGUGCGC-GCCCc- -3'
miRNA:   3'- aGUAGaCG------AGCCGCAUGCGcCGGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.