miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5458 5' -58.9 NC_001798.1 + 29430 0.75 0.294285
Target:  5'- cCAUCUGCgUCGGCGggGgGCGGCgCAUg -3'
miRNA:   3'- aGUAGACG-AGCCGCa-UgCGCCGgGUA- -5'
5458 5' -58.9 NC_001798.1 + 35466 0.73 0.368066
Target:  5'- cCGUCUGCU-GGCc--CGCGGCCCGUc -3'
miRNA:   3'- aGUAGACGAgCCGcauGCGCCGGGUA- -5'
5458 5' -58.9 NC_001798.1 + 2530 0.72 0.409439
Target:  5'- gCGUCgGCggGGCGggggGCGCGGCCCc- -3'
miRNA:   3'- aGUAGaCGagCCGCa---UGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 20263 0.72 0.42678
Target:  5'- -gAUCUGCagcaggCGGCcccacGUGCGCGGCCCc- -3'
miRNA:   3'- agUAGACGa-----GCCG-----CAUGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 154267 0.72 0.42678
Target:  5'- cCGUCccgGCU-GGCGUGCGCaGCCCGg -3'
miRNA:   3'- aGUAGa--CGAgCCGCAUGCGcCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 69019 0.71 0.5002
Target:  5'- gCAUCguagGCggCGGCGcACGCGGCCa-- -3'
miRNA:   3'- aGUAGa---CGa-GCCGCaUGCGCCGGgua -5'
5458 5' -58.9 NC_001798.1 + 109252 0.7 0.555742
Target:  5'- gCGgggCUGCUCGccucgucgggguuuGCGUucgucaACGCGGCCCAc -3'
miRNA:   3'- aGUa--GACGAGC--------------CGCA------UGCGCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 42586 0.69 0.598794
Target:  5'- gUAUCUGUUCGuGUagcaggucgagGUACGCGGCCUc- -3'
miRNA:   3'- aGUAGACGAGC-CG-----------CAUGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 108442 0.69 0.619002
Target:  5'- cUAUCUGCUCGGcCGgccucggaACGCGaGCCUg- -3'
miRNA:   3'- aGUAGACGAGCC-GCa-------UGCGC-CGGGua -5'
5458 5' -58.9 NC_001798.1 + 53314 0.68 0.629124
Target:  5'- gCGUCcgGCU-GGCG-GCGCGGCaCCAUa -3'
miRNA:   3'- aGUAGa-CGAgCCGCaUGCGCCG-GGUA- -5'
5458 5' -58.9 NC_001798.1 + 106681 0.68 0.639249
Target:  5'- gUCAggCUGCUCGuGCGaGCG-GGCCUAc -3'
miRNA:   3'- -AGUa-GACGAGC-CGCaUGCgCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 2970 0.68 0.669557
Target:  5'- gCGUCgGCgugCGGCGggGCGgcCGGCCCGc -3'
miRNA:   3'- aGUAGaCGa--GCCGCa-UGC--GCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 42217 0.68 0.679612
Target:  5'- gCcgCgGgUCGGCGUGCGCGGCg--- -3'
miRNA:   3'- aGuaGaCgAGCCGCAUGCGCCGggua -5'
5458 5' -58.9 NC_001798.1 + 1651 0.68 0.679612
Target:  5'- gCGUCgggGUacaggCGcGCGUGCGCGGCCUc- -3'
miRNA:   3'- aGUAGa--CGa----GC-CGCAUGCGCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 95219 0.67 0.689628
Target:  5'- ---cCUGCUgGGCGgcaaaaACGCGuGCCCGc -3'
miRNA:   3'- aguaGACGAgCCGCa-----UGCGC-CGGGUa -5'
5458 5' -58.9 NC_001798.1 + 44618 0.67 0.689628
Target:  5'- ---cCUGUUCGGUGgGCGCG-CCCGUg -3'
miRNA:   3'- aguaGACGAGCCGCaUGCGCcGGGUA- -5'
5458 5' -58.9 NC_001798.1 + 95301 0.67 0.699597
Target:  5'- uUUGUgUGCgCGGCGUcgagucucggggGCGgGGCCCAc -3'
miRNA:   3'- -AGUAgACGaGCCGCA------------UGCgCCGGGUa -5'
5458 5' -58.9 NC_001798.1 + 71086 0.67 0.699597
Target:  5'- gCGUCaGCccgcggUCGGCGUGCGC-GCCCc- -3'
miRNA:   3'- aGUAGaCG------AGCCGCAUGCGcCGGGua -5'
5458 5' -58.9 NC_001798.1 + 153825 0.67 0.719361
Target:  5'- gCAg--GCgCGGCGUGCGgGGCCUc- -3'
miRNA:   3'- aGUagaCGaGCCGCAUGCgCCGGGua -5'
5458 5' -58.9 NC_001798.1 + 150361 0.67 0.719361
Target:  5'- gCGUCcaccgGCaCGGCGggcgGCGCGgGCCCGg -3'
miRNA:   3'- aGUAGa----CGaGCCGCa---UGCGC-CGGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.