Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5458 | 5' | -58.9 | NC_001798.1 | + | 1651 | 0.68 | 0.679612 |
Target: 5'- gCGUCgggGUacaggCGcGCGUGCGCGGCCUc- -3' miRNA: 3'- aGUAGa--CGa----GC-CGCAUGCGCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 2530 | 0.72 | 0.409439 |
Target: 5'- gCGUCgGCggGGCGggggGCGCGGCCCc- -3' miRNA: 3'- aGUAGaCGagCCGCa---UGCGCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 2970 | 0.68 | 0.669557 |
Target: 5'- gCGUCgGCgugCGGCGggGCGgcCGGCCCGc -3' miRNA: 3'- aGUAGaCGa--GCCGCa-UGC--GCCGGGUa -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 3476 | 0.66 | 0.794776 |
Target: 5'- --uUCUGCgcgCGGuCGUAgcgGCGGCUCAUg -3' miRNA: 3'- aguAGACGa--GCC-GCAUg--CGCCGGGUA- -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 4774 | 0.66 | 0.776611 |
Target: 5'- gCAUCgGCggCGGCGU-CGuCGGCCUc- -3' miRNA: 3'- aGUAGaCGa-GCCGCAuGC-GCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 4961 | 0.66 | 0.767334 |
Target: 5'- cCAUCgcgacCUCGGCcc-CGCGGCCCu- -3' miRNA: 3'- aGUAGac---GAGCCGcauGCGCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 20263 | 0.72 | 0.42678 |
Target: 5'- -gAUCUGCagcaggCGGCcccacGUGCGCGGCCCc- -3' miRNA: 3'- agUAGACGa-----GCCG-----CAUGCGCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 29430 | 0.75 | 0.294285 |
Target: 5'- cCAUCUGCgUCGGCGggGgGCGGCgCAUg -3' miRNA: 3'- aGUAGACG-AGCCGCa-UgCGCCGgGUA- -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 32421 | 0.66 | 0.794776 |
Target: 5'- cCAUCgcggggGuCUCGaGCGU-CGUGGCCCu- -3' miRNA: 3'- aGUAGa-----C-GAGC-CGCAuGCGCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 35466 | 0.73 | 0.368066 |
Target: 5'- cCGUCUGCU-GGCc--CGCGGCCCGUc -3' miRNA: 3'- aGUAGACGAgCCGcauGCGCCGGGUA- -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 35582 | 0.66 | 0.776611 |
Target: 5'- gCGgcgCUGCUCGGC---UGCGGCCgCGg -3' miRNA: 3'- aGUa--GACGAGCCGcauGCGCCGG-GUa -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 42217 | 0.68 | 0.679612 |
Target: 5'- gCcgCgGgUCGGCGUGCGCGGCg--- -3' miRNA: 3'- aGuaGaCgAGCCGCAUGCGCCGggua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 42586 | 0.69 | 0.598794 |
Target: 5'- gUAUCUGUUCGuGUagcaggucgagGUACGCGGCCUc- -3' miRNA: 3'- aGUAGACGAGC-CG-----------CAUGCGCCGGGua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 44618 | 0.67 | 0.689628 |
Target: 5'- ---cCUGUUCGGUGgGCGCG-CCCGUg -3' miRNA: 3'- aguaGACGAGCCGCaUGCGCcGGGUA- -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 53314 | 0.68 | 0.629124 |
Target: 5'- gCGUCcgGCU-GGCG-GCGCGGCaCCAUa -3' miRNA: 3'- aGUAGa-CGAgCCGCaUGCGCCG-GGUA- -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 54354 | 0.67 | 0.719361 |
Target: 5'- cCAUcCUGCgccucgCGGCGU-C-CGGCCCAc -3' miRNA: 3'- aGUA-GACGa-----GCCGCAuGcGCCGGGUa -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 54986 | 0.66 | 0.793881 |
Target: 5'- aCAUCUGCccucgcCGGCGUcuugccgGCGgGGCCg-- -3' miRNA: 3'- aGUAGACGa-----GCCGCA-------UGCgCCGGgua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 60153 | 0.67 | 0.729138 |
Target: 5'- cCGUCU---UGGCGUugGCGGCCg-- -3' miRNA: 3'- aGUAGAcgaGCCGCAugCGCCGGgua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 69019 | 0.71 | 0.5002 |
Target: 5'- gCAUCguagGCggCGGCGcACGCGGCCa-- -3' miRNA: 3'- aGUAGa---CGa-GCCGCaUGCGCCGGgua -5' |
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5458 | 5' | -58.9 | NC_001798.1 | + | 71086 | 0.67 | 0.699597 |
Target: 5'- gCGUCaGCccgcggUCGGCGUGCGC-GCCCc- -3' miRNA: 3'- aGUAGaCG------AGCCGCAUGCGcCGGGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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