miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5459 3' -64.1 NC_001798.1 + 41437 0.65 0.565553
Target:  5'- gACGcGGGCGUGggggguccaugcccCGCCgGGGgGgGCGGUCg -3'
miRNA:   3'- -UGU-CCUGCGC--------------GCGG-UCCgCgCGCCAG- -5'
5459 3' -64.1 NC_001798.1 + 91078 0.66 0.558854
Target:  5'- uUAGGG-GCGCGCCggAGGCG-GCcGUCg -3'
miRNA:   3'- uGUCCUgCGCGCGG--UCCGCgCGcCAG- -5'
5459 3' -64.1 NC_001798.1 + 111012 0.66 0.558854
Target:  5'- uGCGuGGcCGCG-GCCAGGCGUccGUGGcCg -3'
miRNA:   3'- -UGU-CCuGCGCgCGGUCCGCG--CGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 124319 0.66 0.558854
Target:  5'- -gAGGucguCGUGgGCCGGGacgGCGCGGa- -3'
miRNA:   3'- ugUCCu---GCGCgCGGUCCg--CGCGCCag -5'
5459 3' -64.1 NC_001798.1 + 50933 0.66 0.558854
Target:  5'- cGCGGGcAUGCcguaCGCCggAGGCGCGCcuccacccGGUCc -3'
miRNA:   3'- -UGUCC-UGCGc---GCGG--UCCGCGCG--------CCAG- -5'
5459 3' -64.1 NC_001798.1 + 94273 0.66 0.558854
Target:  5'- cACGGGGUGUuCGCCGGGCaGU-CGGUCg -3'
miRNA:   3'- -UGUCCUGCGcGCGGUCCG-CGcGCCAG- -5'
5459 3' -64.1 NC_001798.1 + 140760 0.66 0.558854
Target:  5'- cCAGGACGCGgGgCAcGUGCGCuGUg -3'
miRNA:   3'- uGUCCUGCGCgCgGUcCGCGCGcCAg -5'
5459 3' -64.1 NC_001798.1 + 28988 0.66 0.557899
Target:  5'- cCAGGGgGCgGCGCCGGccaaccgcgcgccGcCGCGCGGg- -3'
miRNA:   3'- uGUCCUgCG-CGCGGUC-------------C-GCGCGCCag -5'
5459 3' -64.1 NC_001798.1 + 78243 0.66 0.549324
Target:  5'- cCGGGccgACGUGCaCCGGGCGCucgGCGG-Cg -3'
miRNA:   3'- uGUCC---UGCGCGcGGUCCGCG---CGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 14459 0.66 0.549324
Target:  5'- aACAGGcACGCcC-CCcGGCG-GCGGUCa -3'
miRNA:   3'- -UGUCC-UGCGcGcGGuCCGCgCGCCAG- -5'
5459 3' -64.1 NC_001798.1 + 20941 0.66 0.539845
Target:  5'- cGCAGG-CGuCGUGUUgAGGCGgGCGGg- -3'
miRNA:   3'- -UGUCCuGC-GCGCGG-UCCGCgCGCCag -5'
5459 3' -64.1 NC_001798.1 + 133450 0.66 0.539845
Target:  5'- -gAGGACGCG-GUUAaGCGCGUGGcCg -3'
miRNA:   3'- ugUCCUGCGCgCGGUcCGCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 60225 0.66 0.539845
Target:  5'- uGCuGGACGaCGCGCCcuccucGCGgGCGG-Ca -3'
miRNA:   3'- -UGuCCUGC-GCGCGGuc----CGCgCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 28553 0.66 0.537956
Target:  5'- cGCAGGugugcuucucgcCGCGCGUgCAGGUGCGCcaucuGGUg -3'
miRNA:   3'- -UGUCCu-----------GCGCGCG-GUCCGCGCG-----CCAg -5'
5459 3' -64.1 NC_001798.1 + 131347 0.66 0.530422
Target:  5'- --cGGGCGCGaCGUCGGcGCccgGCGCGGcCu -3'
miRNA:   3'- uguCCUGCGC-GCGGUC-CG---CGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 2382 0.66 0.530422
Target:  5'- cGCGGGGCGCaGUagGCCuccaGGGCG-GCGGcCg -3'
miRNA:   3'- -UGUCCUGCG-CG--CGG----UCCGCgCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 130309 0.66 0.530422
Target:  5'- --uGGGCGCgGUGCCGGGUGuCGCGc-- -3'
miRNA:   3'- uguCCUGCG-CGCGGUCCGC-GCGCcag -5'
5459 3' -64.1 NC_001798.1 + 125484 0.66 0.530422
Target:  5'- --uGGugGCGC-UUGGGCGuCGCGGUg -3'
miRNA:   3'- uguCCugCGCGcGGUCCGC-GCGCCAg -5'
5459 3' -64.1 NC_001798.1 + 57737 0.66 0.530422
Target:  5'- -aAGGACcgguggGCGCGCCcGGCGCaGCGa-- -3'
miRNA:   3'- ugUCCUG------CGCGCGGuCCGCG-CGCcag -5'
5459 3' -64.1 NC_001798.1 + 93296 0.66 0.530422
Target:  5'- uACcuGGCGCGCGCCgcGGGCcuCGUGGg- -3'
miRNA:   3'- -UGucCUGCGCGCGG--UCCGc-GCGCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.