miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5459 3' -64.1 NC_001798.1 + 31341 0.82 0.049571
Target:  5'- gGCGGGGgGCGCGCgCAGGCGCgGCGGg- -3'
miRNA:   3'- -UGUCCUgCGCGCG-GUCCGCG-CGCCag -5'
5459 3' -64.1 NC_001798.1 + 153425 0.79 0.084813
Target:  5'- cCAGGACccccguCGgGCCAGGCGCGCGGcCg -3'
miRNA:   3'- uGUCCUGc-----GCgCGGUCCGCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 4364 0.78 0.101172
Target:  5'- gGCGGGGgGCGCGCC-GGCG-GCGGUg -3'
miRNA:   3'- -UGUCCUgCGCGCGGuCCGCgCGCCAg -5'
5459 3' -64.1 NC_001798.1 + 110980 0.77 0.117518
Target:  5'- cCAGGgacgucACGCcCGUCAGGCGCGCGGUa -3'
miRNA:   3'- uGUCC------UGCGcGCGGUCCGCGCGCCAg -5'
5459 3' -64.1 NC_001798.1 + 76065 0.76 0.129752
Target:  5'- -gAGGACGUGCggauccaggcccGCCGGGCgaucgagaGCGCGGUCa -3'
miRNA:   3'- ugUCCUGCGCG------------CGGUCCG--------CGCGCCAG- -5'
5459 3' -64.1 NC_001798.1 + 153087 0.76 0.129752
Target:  5'- gGCGGGGCG-GCGCCGGGCccuCGCGGa- -3'
miRNA:   3'- -UGUCCUGCgCGCGGUCCGc--GCGCCag -5'
5459 3' -64.1 NC_001798.1 + 52492 0.76 0.132989
Target:  5'- -gGGGACGCGCGCC-GGCGCagggacgacgcgGCGGcCg -3'
miRNA:   3'- ugUCCUGCGCGCGGuCCGCG------------CGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 1408 0.75 0.142104
Target:  5'- cGCAGcGGCGCGC-CCAGGCcccagcgcgcgcagGCGCGGUg -3'
miRNA:   3'- -UGUC-CUGCGCGcGGUCCG--------------CGCGCCAg -5'
5459 3' -64.1 NC_001798.1 + 36519 0.75 0.143152
Target:  5'- -gGGGGCGCGCGgCggccgggcggGGGCGCGCGG-Cg -3'
miRNA:   3'- ugUCCUGCGCGCgG----------UCCGCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 36561 0.75 0.143152
Target:  5'- -gGGGGCGCGCGgCggccgggcggGGGCGCGCGG-Cg -3'
miRNA:   3'- ugUCCUGCGCGCgG----------UCCGCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 36603 0.75 0.143152
Target:  5'- -gGGGGCGCGCGgCggccgggcggGGGCGCGCGG-Cg -3'
miRNA:   3'- ugUCCUGCGCGCgG----------UCCGCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 27260 0.75 0.146694
Target:  5'- cGCGGGAC-CGCaGCCccguGGCGCGCGGg- -3'
miRNA:   3'- -UGUCCUGcGCG-CGGu---CCGCGCGCCag -5'
5459 3' -64.1 NC_001798.1 + 2937 0.75 0.15402
Target:  5'- cGCAGcuCGCGCaGCCAGGCGCGCaGG-Cg -3'
miRNA:   3'- -UGUCcuGCGCG-CGGUCCGCGCG-CCaG- -5'
5459 3' -64.1 NC_001798.1 + 145794 0.75 0.160506
Target:  5'- cACAGGA-GCGCGCgggcggcagaaacgCGGGCGCggcgGCGGUCg -3'
miRNA:   3'- -UGUCCUgCGCGCG--------------GUCCGCG----CGCCAG- -5'
5459 3' -64.1 NC_001798.1 + 154074 0.75 0.161676
Target:  5'- cCGGGGCGCggcacggcuggaGCGCCGGG-GCGCGGcCg -3'
miRNA:   3'- uGUCCUGCG------------CGCGGUCCgCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 153018 0.75 0.161676
Target:  5'- cCGGGGCGgaguccgggccCGCGCgGcGGCGCGCGGUUg -3'
miRNA:   3'- uGUCCUGC-----------GCGCGgU-CCGCGCGCCAG- -5'
5459 3' -64.1 NC_001798.1 + 150454 0.75 0.161676
Target:  5'- cGCGGGGCGacggcCGCGCgGgGGCGCGCGG-Cg -3'
miRNA:   3'- -UGUCCUGC-----GCGCGgU-CCGCGCGCCaG- -5'
5459 3' -64.1 NC_001798.1 + 49562 0.75 0.163247
Target:  5'- gACAGGuacuaccgcgagacCGCGCGCCuGGCGCGC-GUCc -3'
miRNA:   3'- -UGUCCu-------------GCGCGCGGuCCGCGCGcCAG- -5'
5459 3' -64.1 NC_001798.1 + 43702 0.74 0.169673
Target:  5'- cCGGaGAUGCGUgGCCAGGCGCGgGGg- -3'
miRNA:   3'- uGUC-CUGCGCG-CGGUCCGCGCgCCag -5'
5459 3' -64.1 NC_001798.1 + 149642 0.74 0.169673
Target:  5'- gGCAGGuaGCGCGUgagGCCGGGCGC-CgGGUCg -3'
miRNA:   3'- -UGUCC--UGCGCG---CGGUCCGCGcG-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.