miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5459 5' -57.7 NC_001798.1 + 79184 0.66 0.845039
Target:  5'- cCUGUgcgcccggCUGCGGgaugagGUGGUGCGCAGgGUg -3'
miRNA:   3'- -GACA--------GGCGCUag----CACCACGCGUCgUA- -5'
5459 5' -57.7 NC_001798.1 + 27383 0.66 0.836924
Target:  5'- -gGUCUGCGAgggcgagCgGUGGUGCGacuGGCGUc -3'
miRNA:   3'- gaCAGGCGCUa------G-CACCACGCg--UCGUA- -5'
5459 5' -57.7 NC_001798.1 + 4196 0.66 0.811498
Target:  5'- -cGcCCGCGG-CGUGGUcUGCGGCGc -3'
miRNA:   3'- gaCaGGCGCUaGCACCAcGCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 11985 0.67 0.793724
Target:  5'- -cGgggCUGUGggCGUGGUGCGUcgAGCGa -3'
miRNA:   3'- gaCa--GGCGCuaGCACCACGCG--UCGUa -5'
5459 5' -57.7 NC_001798.1 + 105023 0.67 0.784615
Target:  5'- -aGUCCGCGAUgGUGcGUuccuggaucGUGCGGUAc -3'
miRNA:   3'- gaCAGGCGCUAgCAC-CA---------CGCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 72382 0.67 0.784615
Target:  5'- gCUGgaggaCGCGAUCGUGcUGCuGCGGCu- -3'
miRNA:   3'- -GACag---GCGCUAGCACcACG-CGUCGua -5'
5459 5' -57.7 NC_001798.1 + 42209 0.67 0.77537
Target:  5'- gUGgaagcgCCGCgGGUCG-GcGUGCGCGGCGa -3'
miRNA:   3'- gACa-----GGCG-CUAGCaC-CACGCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 113484 0.68 0.707593
Target:  5'- uUGUgCGUGAUCaUGGgcgGCGCGGCc- -3'
miRNA:   3'- gACAgGCGCUAGcACCa--CGCGUCGua -5'
5459 5' -57.7 NC_001798.1 + 150189 0.68 0.707593
Target:  5'- --cUCCGCGG-CGUGGgGgGCGGCAc -3'
miRNA:   3'- gacAGGCGCUaGCACCaCgCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 154030 0.68 0.697583
Target:  5'- -aGUCUGCGGUUGggagcgcgccgGG-GCGCGGCAc -3'
miRNA:   3'- gaCAGGCGCUAGCa----------CCaCGCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 4859 0.69 0.677408
Target:  5'- -gGUCCGgGuUCGgGGUGgGCGGCGg -3'
miRNA:   3'- gaCAGGCgCuAGCaCCACgCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 134439 0.69 0.666244
Target:  5'- cCUGUCCGCGcgCGUcgccgagcaccccGGcGCGCGGUu- -3'
miRNA:   3'- -GACAGGCGCuaGCA-------------CCaCGCGUCGua -5'
5459 5' -57.7 NC_001798.1 + 1265 0.69 0.64689
Target:  5'- -cGUCCGCG-UCGUc--GCGCAGCAc -3'
miRNA:   3'- gaCAGGCGCuAGCAccaCGCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 153719 0.7 0.626472
Target:  5'- ----gCGCGccagguacuccGUCGUGGUGCGCAGCc- -3'
miRNA:   3'- gacagGCGC-----------UAGCACCACGCGUCGua -5'
5459 5' -57.7 NC_001798.1 + 36131 0.7 0.626472
Target:  5'- -cG-CCGCGAUCccgccgGUGGgGCGCGGCGg -3'
miRNA:   3'- gaCaGGCGCUAG------CACCaCGCGUCGUa -5'
5459 5' -57.7 NC_001798.1 + 114282 0.7 0.575632
Target:  5'- cCUGUCCGUGG-CGUGcGUGUGCAcCAa -3'
miRNA:   3'- -GACAGGCGCUaGCAC-CACGCGUcGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.