miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5460 3' -59.7 NC_001798.1 + 27355 0.65 0.793151
Target:  5'- gGCGgGCGGGUGCuUGGUGCAacugucuggucugcGaGGgCGAg -3'
miRNA:   3'- -CGCgCGUCCAUG-GCCAUGU--------------C-CCgGCU- -5'
5460 3' -59.7 NC_001798.1 + 68743 0.66 0.787852
Target:  5'- -gGCGCAGG--CCGGgaugguaacggccgaACGGGGCCu- -3'
miRNA:   3'- cgCGCGUCCauGGCCa--------------UGUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 150451 0.66 0.786964
Target:  5'- aCGCGCGGGgcgacgGCCGc-GCGGGGgCGc -3'
miRNA:   3'- cGCGCGUCCa-----UGGCcaUGUCCCgGCu -5'
5460 3' -59.7 NC_001798.1 + 39863 0.66 0.786964
Target:  5'- -gGCGUcgaggcuucggGGGUGCCGGcguccuCGGGGCgGGc -3'
miRNA:   3'- cgCGCG-----------UCCAUGGCCau----GUCCCGgCU- -5'
5460 3' -59.7 NC_001798.1 + 56760 0.66 0.778014
Target:  5'- -aGCugGCAGGUGaaGGUGCgcggGGGGCCc- -3'
miRNA:   3'- cgCG--CGUCCAUggCCAUG----UCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 20343 0.66 0.778014
Target:  5'- -gGCGCAGGcgguuggcgcUGCCGGgcggguuCGGGGCgGc -3'
miRNA:   3'- cgCGCGUCC----------AUGGCCau-----GUCCCGgCu -5'
5460 3' -59.7 NC_001798.1 + 22147 0.66 0.778014
Target:  5'- -gGCGgGGGccaaCGGgagcGCGGGGCCGGc -3'
miRNA:   3'- cgCGCgUCCaug-GCCa---UGUCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 94980 0.66 0.778014
Target:  5'- aGCGUGCAGGcggcgGCCgccuGGgccccGCAGGGCgGc -3'
miRNA:   3'- -CGCGCGUCCa----UGG----CCa----UGUCCCGgCu -5'
5460 3' -59.7 NC_001798.1 + 95305 0.66 0.778014
Target:  5'- uGUGCGCGGcGUcgagucUCGGggGCGGGGCCc- -3'
miRNA:   3'- -CGCGCGUC-CAu-----GGCCa-UGUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 1432 0.66 0.768942
Target:  5'- cGCGCGCAGGcg-CGGUGCgAGuGcGCCu- -3'
miRNA:   3'- -CGCGCGUCCaugGCCAUG-UC-C-CGGcu -5'
5460 3' -59.7 NC_001798.1 + 103506 0.66 0.768942
Target:  5'- uCGCcCGGGUccccGCUGucGUACAGGGCCa- -3'
miRNA:   3'- cGCGcGUCCA----UGGC--CAUGUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 119882 0.66 0.768942
Target:  5'- gGC-CGgGGGgaucCCGGU-CGGGGCCGc -3'
miRNA:   3'- -CGcGCgUCCau--GGCCAuGUCCCGGCu -5'
5460 3' -59.7 NC_001798.1 + 12683 0.66 0.766198
Target:  5'- aGCGCGCcgaugaucaggcccGGGuUGCUGGgggcgGCGGGGgCGu -3'
miRNA:   3'- -CGCGCG--------------UCC-AUGGCCa----UGUCCCgGCu -5'
5460 3' -59.7 NC_001798.1 + 153003 0.66 0.759755
Target:  5'- -gGCGCGGGg--CGGUcgcCGGGGCgGAg -3'
miRNA:   3'- cgCGCGUCCaugGCCAu--GUCCCGgCU- -5'
5460 3' -59.7 NC_001798.1 + 2954 0.66 0.759755
Target:  5'- gGCGCGCAGGcgggGCgCGucggcGUGCGGcggggcGGCCGGc -3'
miRNA:   3'- -CGCGCGUCCa---UG-GC-----CAUGUC------CCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 118623 0.66 0.759755
Target:  5'- gGCGCuGCAG----CGGUGCgAGGGUCGAg -3'
miRNA:   3'- -CGCG-CGUCcaugGCCAUG-UCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 151604 0.66 0.759755
Target:  5'- -gGCGCucg-GCCGGggGCcGGGCCGGg -3'
miRNA:   3'- cgCGCGuccaUGGCCa-UGuCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 93097 0.66 0.759755
Target:  5'- cGCGCGCGac-GCCGGgaacaAGGGCCc- -3'
miRNA:   3'- -CGCGCGUccaUGGCCaug--UCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 136640 0.66 0.750462
Target:  5'- uGCGgGguGGcGCaaa-ACAGGGCCGAg -3'
miRNA:   3'- -CGCgCguCCaUGgccaUGUCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 47064 0.66 0.750462
Target:  5'- aCGCGCAa-UGCCGGggcgACAGcGCCGGu -3'
miRNA:   3'- cGCGCGUccAUGGCCa---UGUCcCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.