miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5460 3' -59.7 NC_001798.1 + 60259 0.67 0.744839
Target:  5'- gGUGaCGCAGGUGCgCGcGUuaaacACggaaaacuugccguuGGGGCCGAg -3'
miRNA:   3'- -CGC-GCGUCCAUG-GC-CA-----UG---------------UCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 42768 0.67 0.741071
Target:  5'- gGCGCGCGGG-GCCG--ACAGGcGCUu- -3'
miRNA:   3'- -CGCGCGUCCaUGGCcaUGUCC-CGGcu -5'
5460 3' -59.7 NC_001798.1 + 38416 0.67 0.741071
Target:  5'- cGCGCuaugaaGCGGG--CCGGgcCGGGGCCc- -3'
miRNA:   3'- -CGCG------CGUCCauGGCCauGUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 145800 0.67 0.740127
Target:  5'- aGCGCGCGGGcgGCagaaacgCGGgcgcgGCGGcGGUCGGg -3'
miRNA:   3'- -CGCGCGUCCa-UG-------GCCa----UGUC-CCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 54696 0.67 0.739182
Target:  5'- aGCGCGaggccgcCGGGgucuacgACgCGGUGCggaccugGGGGCCGGa -3'
miRNA:   3'- -CGCGC-------GUCCa------UG-GCCAUG-------UCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 27191 0.67 0.738237
Target:  5'- gGCGCGgGGGgagGggcgggggaagcccCCGGgGCGGGGCgCGGg -3'
miRNA:   3'- -CGCGCgUCCa--U--------------GGCCaUGUCCCG-GCU- -5'
5460 3' -59.7 NC_001798.1 + 40947 0.67 0.732543
Target:  5'- uCGCGCAGGcGCCccgggagaugagagcGGUGCcgacgaugagaccgAGGGCCa- -3'
miRNA:   3'- cGCGCGUCCaUGG---------------CCAUG--------------UCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 11743 0.67 0.731591
Target:  5'- cGCuCGaGGGUcCCaGGcGCGGGGCCGAa -3'
miRNA:   3'- -CGcGCgUCCAuGG-CCaUGUCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 4843 0.67 0.731591
Target:  5'- cGCGCgGCGGGgcgacgguCCGGguuCGGGGUgGGc -3'
miRNA:   3'- -CGCG-CGUCCau------GGCCau-GUCCCGgCU- -5'
5460 3' -59.7 NC_001798.1 + 150839 0.67 0.731591
Target:  5'- gGCGC-CAGGgggcGCCGGUcgggucGCGgcGGGCUGGg -3'
miRNA:   3'- -CGCGcGUCCa---UGGCCA------UGU--CCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 30150 0.67 0.731591
Target:  5'- aGCGgGCGGGggGCCGGggugagGgAGGGacaCGGg -3'
miRNA:   3'- -CGCgCGUCCa-UGGCCa-----UgUCCCg--GCU- -5'
5460 3' -59.7 NC_001798.1 + 148289 0.67 0.72203
Target:  5'- gGCGgGCAGGUGUgCGG-GCGGGGUgGGg -3'
miRNA:   3'- -CGCgCGUCCAUG-GCCaUGUCCCGgCU- -5'
5460 3' -59.7 NC_001798.1 + 24821 0.67 0.720109
Target:  5'- cUGCGCGGGgaccugcgcgugGCCGGcgGCAGcgaGGCCGc -3'
miRNA:   3'- cGCGCGUCCa-----------UGGCCa-UGUC---CCGGCu -5'
5460 3' -59.7 NC_001798.1 + 6246 0.67 0.716258
Target:  5'- aCGgGCGGGggacggggggacggGCCGGggggAC-GGGCCGGg -3'
miRNA:   3'- cGCgCGUCCa-------------UGGCCa---UGuCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 102060 0.67 0.712396
Target:  5'- uGCGUGgGGGUGgUGGU--AGGGCCc- -3'
miRNA:   3'- -CGCGCgUCCAUgGCCAugUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 36095 0.67 0.712396
Target:  5'- gGUGgGCGGGUGgUGGgGgGGGGCCc- -3'
miRNA:   3'- -CGCgCGUCCAUgGCCaUgUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 3007 0.67 0.712396
Target:  5'- cGgGCGCGGGgGCgCGGc---GGGCCGGg -3'
miRNA:   3'- -CgCGCGUCCaUG-GCCauguCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 86441 0.67 0.712396
Target:  5'- -gGCGCAGc--CCGGggACgGGGGCCGGu -3'
miRNA:   3'- cgCGCGUCcauGGCCa-UG-UCCCGGCU- -5'
5460 3' -59.7 NC_001798.1 + 69182 0.67 0.711429
Target:  5'- gGCGgGcCAGGUGggggaggUCGGUggggugccGCAGGGCCa- -3'
miRNA:   3'- -CGCgC-GUCCAU-------GGCCA--------UGUCCCGGcu -5'
5460 3' -59.7 NC_001798.1 + 2794 0.67 0.710462
Target:  5'- -gGCGCGGGcuccgcggcagcGCCGGgccCAGGGCCc- -3'
miRNA:   3'- cgCGCGUCCa-----------UGGCCau-GUCCCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.