miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5460 5' -57 NC_001798.1 + 39229 0.66 0.877933
Target:  5'- gGCCAGCACGGgagCCcaGG-GGCUgUUCg -3'
miRNA:   3'- aCGGUUGUGCCa--GG--CCaUCGAgAGGa -5'
5460 5' -57 NC_001798.1 + 152999 0.66 0.863273
Target:  5'- aGCCGGCGCGGggcggucgCCGG-GGCggagUCCg -3'
miRNA:   3'- aCGGUUGUGCCa-------GGCCaUCGag--AGGa -5'
5460 5' -57 NC_001798.1 + 116671 0.66 0.863273
Target:  5'- gGCCAACACGGUCa---AGCgcaugUUCCa -3'
miRNA:   3'- aCGGUUGUGCCAGgccaUCGa----GAGGa -5'
5460 5' -57 NC_001798.1 + 35273 0.66 0.85563
Target:  5'- aGCaacACGCGGgCgGGgcucgGGCUCUCCg -3'
miRNA:   3'- aCGgu-UGUGCCaGgCCa----UCGAGAGGa -5'
5460 5' -57 NC_001798.1 + 91263 0.66 0.847786
Target:  5'- cUGCCGGCggcaaggcgGCGGUgCCgucugGGUGGCUCcCCg -3'
miRNA:   3'- -ACGGUUG---------UGCCA-GG-----CCAUCGAGaGGa -5'
5460 5' -57 NC_001798.1 + 115598 0.67 0.839748
Target:  5'- cGCCcACGgccgGGUCCGGUGGgUCgCCg -3'
miRNA:   3'- aCGGuUGUg---CCAGGCCAUCgAGaGGa -5'
5460 5' -57 NC_001798.1 + 128256 0.67 0.81454
Target:  5'- gGCCGGCAUGGUggaCCGcgGGCUCggCCg -3'
miRNA:   3'- aCGGUUGUGCCA---GGCcaUCGAGa-GGa -5'
5460 5' -57 NC_001798.1 + 139355 0.67 0.805798
Target:  5'- gGCCAugGCGGcgUCCGGcggggagGGCUCgcgggacgUCCg -3'
miRNA:   3'- aCGGUugUGCC--AGGCCa------UCGAG--------AGGa -5'
5460 5' -57 NC_001798.1 + 29405 0.67 0.7969
Target:  5'- cGCCGGCGgGGcgCCGGgGGgaCUCCc -3'
miRNA:   3'- aCGGUUGUgCCa-GGCCaUCgaGAGGa -5'
5460 5' -57 NC_001798.1 + 69538 0.67 0.7969
Target:  5'- aGCUcGCGCGGgCUGGUGGUggUUUCCa -3'
miRNA:   3'- aCGGuUGUGCCaGGCCAUCG--AGAGGa -5'
5460 5' -57 NC_001798.1 + 134278 0.68 0.787854
Target:  5'- cGCCAG-ACGGgCCGGUGGgccCUCUUCg -3'
miRNA:   3'- aCGGUUgUGCCaGGCCAUC---GAGAGGa -5'
5460 5' -57 NC_001798.1 + 52215 0.68 0.778669
Target:  5'- gGCgGagcAgACGGUCCaGUGGCUCUCg- -3'
miRNA:   3'- aCGgU---UgUGCCAGGcCAUCGAGAGga -5'
5460 5' -57 NC_001798.1 + 122824 0.68 0.776817
Target:  5'- gGCCAGgGCGGUCgGGggcggcggcggcGGCUCgUCCc -3'
miRNA:   3'- aCGGUUgUGCCAGgCCa-----------UCGAG-AGGa -5'
5460 5' -57 NC_001798.1 + 80275 0.68 0.759917
Target:  5'- gGCCGACugGcG-CCGGggcaAGCUgUCCg -3'
miRNA:   3'- aCGGUUGugC-CaGGCCa---UCGAgAGGa -5'
5460 5' -57 NC_001798.1 + 107368 0.68 0.750369
Target:  5'- cGCCAACACGGUgCGGUA-C-CUgCa -3'
miRNA:   3'- aCGGUUGUGCCAgGCCAUcGaGAgGa -5'
5460 5' -57 NC_001798.1 + 125467 0.69 0.73097
Target:  5'- cGCCcggGAcCACGGUCUGGUGGCgCUUg- -3'
miRNA:   3'- aCGG---UU-GUGCCAGGCCAUCGaGAGga -5'
5460 5' -57 NC_001798.1 + 143322 0.69 0.726065
Target:  5'- cGCCGGCcacgcucgacguaaGCGGggagaucgcaucCCGGUccGGCUCUCCg -3'
miRNA:   3'- aCGGUUG--------------UGCCa-----------GGCCA--UCGAGAGGa -5'
5460 5' -57 NC_001798.1 + 19986 0.69 0.721139
Target:  5'- cGCCgGACGCGGauUCCGG--GUUCUCCc -3'
miRNA:   3'- aCGG-UUGUGCC--AGGCCauCGAGAGGa -5'
5460 5' -57 NC_001798.1 + 4038 0.69 0.701259
Target:  5'- gGCCAccgccGCGCGGgcCCGGcGGCgCUCCa -3'
miRNA:   3'- aCGGU-----UGUGCCa-GGCCaUCGaGAGGa -5'
5460 5' -57 NC_001798.1 + 1722 0.69 0.701259
Target:  5'- gGCCAGCACGGUgCGGcgcAGgUC-CCg -3'
miRNA:   3'- aCGGUUGUGCCAgGCCa--UCgAGaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.