Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 53107 | 0.66 | 0.785388 |
Target: 5'- gGGcGCGCGGCGCGaGcucCCUGCgGCUGGc -3' miRNA: 3'- -CCaUGUGUCGCGC-Ccu-GGGCG-CGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 16155 | 0.66 | 0.785388 |
Target: 5'- cGGggGCACcgAGCGCcacgGGcGGCCCGCGggGAc -3' miRNA: 3'- -CCa-UGUG--UCGCG----CC-CUGGGCGCgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 79387 | 0.66 | 0.785388 |
Target: 5'- cGG-GCGCgGGCGCGGaGuccgcGCCCGCGCc-- -3' miRNA: 3'- -CCaUGUG-UCGCGCC-C-----UGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 58409 | 0.66 | 0.785388 |
Target: 5'- --cGCGCGGCGCaGGcGGCCaGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-CC-CUGGgCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 65671 | 0.66 | 0.77641 |
Target: 5'- aGGUACACGcacGCcccgGUGGGGCgCGUGCUc- -3' miRNA: 3'- -CCAUGUGU---CG----CGCCCUGgGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 102570 | 0.67 | 0.720282 |
Target: 5'- cGGgugGCGgGGCGCGGauuGCCCGgugacgaGCUGAu -3' miRNA: 3'- -CCa--UGUgUCGCGCCc--UGGGCg------CGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 150557 | 0.67 | 0.720282 |
Target: 5'- aGGagaGCGGCcCGGGGCCCGCGg--- -3' miRNA: 3'- -CCaugUGUCGcGCCCUGGGCGCgacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2274 | 0.67 | 0.71932 |
Target: 5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3' miRNA: 3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 74256 | 0.67 | 0.71063 |
Target: 5'- --cGCACGGCcugcccGCGGGaacGCCCGCGUUu- -3' miRNA: 3'- ccaUGUGUCG------CGCCC---UGGGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 70983 | 0.67 | 0.71063 |
Target: 5'- --cACACGGUGCGGGAgaucgaCCCG-GCUa- -3' miRNA: 3'- ccaUGUGUCGCGCCCU------GGGCgCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 27247 | 0.67 | 0.700914 |
Target: 5'- cGGgggAgGCGGcCGCGGGACCgcagccccguggCGCGCgGGg -3' miRNA: 3'- -CCa--UgUGUC-GCGCCCUGG------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5718 | 0.67 | 0.73842 |
Target: 5'- aGUGCG-AGCGCuggcgcccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- cCAUGUgUCGCG-------------CCCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 31337 | 0.67 | 0.739366 |
Target: 5'- --gGC-CGGCGgGGGGCgCGCGCa-- -3' miRNA: 3'- ccaUGuGUCGCgCCCUGgGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 96338 | 0.67 | 0.739366 |
Target: 5'- aGGUGCGCGuGCuGCGGcggcaccugcGGCCgGgGCUGGa -3' miRNA: 3'- -CCAUGUGU-CG-CGCC----------CUGGgCgCGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 149739 | 0.67 | 0.739366 |
Target: 5'- cGGcGCAgCAGCGCGGGGgCCGagGgaGGu -3' miRNA: 3'- -CCaUGU-GUCGCGCCCUgGGCg-CgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2210 | 0.67 | 0.739366 |
Target: 5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2569 | 0.67 | 0.739366 |
Target: 5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3' miRNA: 3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 153739 | 0.67 | 0.7422 |
Target: 5'- uGGUGCGCAGcCguagcgccaggugggGCGGaagggggcgcugcGGCCCGCGCUc- -3' miRNA: 3'- -CCAUGUGUC-G---------------CGCC-------------CUGGGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 71404 | 0.67 | 0.74878 |
Target: 5'- uGGU----GGCGgGGGuGCCCGCGCgGAc -3' miRNA: 3'- -CCAugugUCGCgCCC-UGGGCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 119516 | 0.67 | 0.700914 |
Target: 5'- cGGggGCA-GGCGUguugggaaGGGACCCGCGgaGGa -3' miRNA: 3'- -CCa-UGUgUCGCG--------CCCUGGGCGCgaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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