Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5461 | 5' | -59.5 | NC_001798.1 | + | 111773 | 0.72 | 0.415554 |
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Target: 5'- cGGUugGgGGCGCGGGuGCCCGUGa--- -3' miRNA: 3'- -CCAugUgUCGCGCCC-UGGGCGCgacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 95011 | 0.72 | 0.414707 |
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Target: 5'- --aGgGCGGCGCGGGccuggaggccgggGCCCGCGCgcUGAu -3' miRNA: 3'- ccaUgUGUCGCGCCC-------------UGGGCGCG--ACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 134681 | 0.74 | 0.336375 |
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Target: 5'- gGGU-CACGGCGCGGGugCUGCuGCc-- -3' miRNA: 3'- -CCAuGUGUCGCGCCCugGGCG-CGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 1537 | 0.74 | 0.343779 |
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Target: 5'- gGGaGCACGGCGCGGcGguACUCGCGCgggGAc -3' miRNA: 3'- -CCaUGUGUCGCGCC-C--UGGGCGCGa--CU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 117094 | 0.75 | 0.307934 |
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Target: 5'- --aGCGCGGCGgGGGAgaaCGCGCUGAc -3' miRNA: 3'- ccaUGUGUCGCgCCCUgg-GCGCGACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 24807 | 0.75 | 0.300442 |
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Target: 5'- uGGUGCugAugcgccuGCGCgGGGACCUGCGCgUGGc -3' miRNA: 3'- -CCAUGugU-------CGCG-CCCUGGGCGCG-ACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 30182 | 0.77 | 0.211058 |
|
Target: 5'- cGGgggACACGGCGCGGGGgucccgccucacgcCCCGCGCc-- -3' miRNA: 3'- -CCa--UGUGUCGCGCCCU--------------GGGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 105188 | 0.78 | 0.188457 |
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Target: 5'- ---cCGCGGCgGCGGGGCCCGCGgUGGg -3' miRNA: 3'- ccauGUGUCG-CGCCCUGGGCGCgACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 25958 | 0.8 | 0.147362 |
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Target: 5'- cGUGCgcuggccgGCGGCGCGGGACCUGCGCc-- -3' miRNA: 3'- cCAUG--------UGUCGCGCCCUGGGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 49131 | 0.81 | 0.123636 |
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Target: 5'- uGGgcuuCAGCGCGGGuCCCGCGCUGu -3' miRNA: 3'- -CCauguGUCGCGCCCuGGGCGCGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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