Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 97542 | 0.68 | 0.671474 |
Target: 5'- cGGagGCGUGGCGCGGGgacGCCCGCGagcGAg -3' miRNA: 3'- -CCa-UGUGUCGCGCCC---UGGGCGCga-CU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 123217 | 0.68 | 0.66159 |
Target: 5'- cGGUucugucGCGgGGCGgcuaCGGGACCCGgccuugucCGCUGAc -3' miRNA: 3'- -CCA------UGUgUCGC----GCCCUGGGC--------GCGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 146829 | 0.68 | 0.691144 |
Target: 5'- cGGggGCGCGGCaGCaacgaacgcaGGGGCCCGcCGCcGAu -3' miRNA: 3'- -CCa-UGUGUCG-CG----------CCCUGGGC-GCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 51952 | 0.68 | 0.641761 |
Target: 5'- -cUGCuCAGCGCGGGAggggCCGCGCc-- -3' miRNA: 3'- ccAUGuGUCGCGCCCUg---GGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 117566 | 0.68 | 0.680344 |
Target: 5'- aGGUGcCGCGGCGCGccggcauGGACCaCGgGCagGAu -3' miRNA: 3'- -CCAU-GUGUCGCGC-------CCUGG-GCgCGa-CU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 149457 | 0.67 | 0.74878 |
Target: 5'- gGGUGCgGCGGCuccacGCGGGGgCCGCGg--- -3' miRNA: 3'- -CCAUG-UGUCG-----CGCCCUgGGCGCgacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 71404 | 0.67 | 0.74878 |
Target: 5'- uGGU----GGCGgGGGuGCCCGCGCgGAc -3' miRNA: 3'- -CCAugugUCGCgCCC-UGGGCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 153739 | 0.67 | 0.7422 |
Target: 5'- uGGUGCGCAGcCguagcgccaggugggGCGGaagggggcgcugcGGCCCGCGCUc- -3' miRNA: 3'- -CCAUGUGUC-G---------------CGCC-------------CUGGGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2569 | 0.67 | 0.739366 |
Target: 5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3' miRNA: 3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2210 | 0.67 | 0.739366 |
Target: 5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 149739 | 0.67 | 0.739366 |
Target: 5'- cGGcGCAgCAGCGCGGGGgCCGagGgaGGu -3' miRNA: 3'- -CCaUGU-GUCGCGCCCUgGGCg-CgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 150557 | 0.67 | 0.720282 |
Target: 5'- aGGagaGCGGCcCGGGGCCCGCGg--- -3' miRNA: 3'- -CCaugUGUCGcGCCCUGGGCGCgacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2274 | 0.67 | 0.71932 |
Target: 5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3' miRNA: 3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 74256 | 0.67 | 0.71063 |
Target: 5'- --cGCACGGCcugcccGCGGGaacGCCCGCGUUu- -3' miRNA: 3'- ccaUGUGUCG------CGCCC---UGGGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 70983 | 0.67 | 0.71063 |
Target: 5'- --cACACGGUGCGGGAgaucgaCCCG-GCUa- -3' miRNA: 3'- ccaUGUGUCGCGCCCU------GGGCgCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 27247 | 0.67 | 0.700914 |
Target: 5'- cGGgggAgGCGGcCGCGGGACCgcagccccguggCGCGCgGGg -3' miRNA: 3'- -CCa--UgUGUC-GCGCCCUGG------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 119516 | 0.67 | 0.700914 |
Target: 5'- cGGggGCA-GGCGUguugggaaGGGACCCGCGgaGGa -3' miRNA: 3'- -CCa-UGUgUCGCG--------CCCUGGGCGCgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 23521 | 0.67 | 0.700914 |
Target: 5'- ---cCGCGG-GCGGGACCCucgGCGCgGAc -3' miRNA: 3'- ccauGUGUCgCGCCCUGGG---CGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 34799 | 0.67 | 0.700914 |
Target: 5'- --gGCGCGGCcCGGGGCCCcggggcccccGCGCUc- -3' miRNA: 3'- ccaUGUGUCGcGCCCUGGG----------CGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5862 | 0.67 | 0.69994 |
Target: 5'- --aGCACuGGCGCccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- ccaUGUG-UCGCG-------CCCUGGGCGCGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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