Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 62808 | 0.68 | 0.690165 |
Target: 5'- cGGUuucugGCGCAGCuGUGGGcccacgcgcccccGCCCGCGUUu- -3' miRNA: 3'- -CCA-----UGUGUCG-CGCCC-------------UGGGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 23647 | 0.68 | 0.691144 |
Target: 5'- cGGgcCGCcuggAGCGCcgccGGGCCCGCGCg-- -3' miRNA: 3'- -CCauGUG----UCGCGc---CCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 35278 | 0.68 | 0.691144 |
Target: 5'- --cACGCGG-GCGGGGCUCGgGCUc- -3' miRNA: 3'- ccaUGUGUCgCGCCCUGGGCgCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 65078 | 0.68 | 0.691144 |
Target: 5'- gGGUGCACuggGGCGUGGGuuguagCGUGCUGu -3' miRNA: 3'- -CCAUGUG---UCGCGCCCugg---GCGCGACu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 146829 | 0.68 | 0.691144 |
Target: 5'- cGGggGCGCGGCaGCaacgaacgcaGGGGCCCGcCGCcGAu -3' miRNA: 3'- -CCa-UGUGUCG-CG----------CCCUGGGC-GCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5862 | 0.67 | 0.69994 |
Target: 5'- --aGCACuGGCGCccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- ccaUGUG-UCGCG-------CCCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 111130 | 0.67 | 0.69994 |
Target: 5'- --aGCGCAGCaggGCGGcgcugucGGCCCGCGCg-- -3' miRNA: 3'- ccaUGUGUCG---CGCC-------CUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 34799 | 0.67 | 0.700914 |
Target: 5'- --gGCGCGGCcCGGGGCCCcggggcccccGCGCUc- -3' miRNA: 3'- ccaUGUGUCGcGCCCUGGG----------CGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 23521 | 0.67 | 0.700914 |
Target: 5'- ---cCGCGG-GCGGGACCCucgGCGCgGAc -3' miRNA: 3'- ccauGUGUCgCGCCCUGGG---CGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 119516 | 0.67 | 0.700914 |
Target: 5'- cGGggGCA-GGCGUguugggaaGGGACCCGCGgaGGa -3' miRNA: 3'- -CCa-UGUgUCGCG--------CCCUGGGCGCgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 27247 | 0.67 | 0.700914 |
Target: 5'- cGGgggAgGCGGcCGCGGGACCgcagccccguggCGCGCgGGg -3' miRNA: 3'- -CCa--UgUGUC-GCGCCCUGG------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 74256 | 0.67 | 0.71063 |
Target: 5'- --cGCACGGCcugcccGCGGGaacGCCCGCGUUu- -3' miRNA: 3'- ccaUGUGUCG------CGCCC---UGGGCGCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 70983 | 0.67 | 0.71063 |
Target: 5'- --cACACGGUGCGGGAgaucgaCCCG-GCUa- -3' miRNA: 3'- ccaUGUGUCGCGCCCU------GGGCgCGAcu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2274 | 0.67 | 0.71932 |
Target: 5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3' miRNA: 3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 150557 | 0.67 | 0.720282 |
Target: 5'- aGGagaGCGGCcCGGGGCCCGCGg--- -3' miRNA: 3'- -CCaugUGUCGcGCCCUGGGCGCgacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 102570 | 0.67 | 0.720282 |
Target: 5'- cGGgugGCGgGGCGCGGauuGCCCGgugacgaGCUGAu -3' miRNA: 3'- -CCa--UGUgUCGCGCCc--UGGGCg------CGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5718 | 0.67 | 0.73842 |
Target: 5'- aGUGCG-AGCGCuggcgcccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- cCAUGUgUCGCG-------------CCCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 31337 | 0.67 | 0.739366 |
Target: 5'- --gGC-CGGCGgGGGGCgCGCGCa-- -3' miRNA: 3'- ccaUGuGUCGCgCCCUGgGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 149739 | 0.67 | 0.739366 |
Target: 5'- cGGcGCAgCAGCGCGGGGgCCGagGgaGGu -3' miRNA: 3'- -CCaUGU-GUCGCGCCCUgGGCg-CgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2210 | 0.67 | 0.739366 |
Target: 5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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